RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MRPS16Q9Y3D3 137 aaKnown RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ALPK2Q86TB3 2170 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 LRP5LA4QPB2 252 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 C19orf67A6NJJ6 358 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 SPINK2P20155 84 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 RPL23P62829 140 aaKnown RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PLEKHF2Q9H8W4 249 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF581Q9P0T4 197 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 A0A087WZY1 265 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1B0GX78 115 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 CHEK1O14757 476 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 OR2J3O76001 311 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GLI4P10075 376 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GZMHP20718 246 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GLRA1P23415 457 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 MRPL14Q6P1L8 145 aaKnown RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 MOB1BQ7L9L4 216 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 C7orf69Q9H7B7 122 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 NAT8Q9UHE5 227 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 MMP17Q9ULZ9 603 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF835Q9Y2P0 537 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 TOX4O94842 621 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 UMODP07911 640 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PAFAH1B2P68402 229 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 COL10A1Q03692 680 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 LYZL2Q7Z4W2 148 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ZBTB34Q8NCN2 500 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 OR10D4PQ8NGN7 298 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PSMG3-AS1Q96PY0 264 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 RNF2Q99496 336 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ATP5SQ99766 215 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GNG12Q9UBI6 72 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PTPRSQ13332 1948 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 A0A1W2PR80 420 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 NBEAP1P0C6P0 100 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 CGB3P0DN86 165 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 CGB7P0DN87 165 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 HBG1P69891 147 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 HBG2P69892 147 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ARL16Q0P5N6 197 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 TGIF1Q15583 401 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 ATP6V1FQ16864 119 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 SELENOHQ8IZQ5 122 aaKnown RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 OR10V1Q8NGI7 309 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 GPR87Q9BY21 358 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 DEPPQ9NTK1 212 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 POLR3KQ9Y2Y1 108 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 MED19A0JLT2 244 aaPredicted RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 HRASP01112 189 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 IGKV1-5P01602 117 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 CTSBP07858 339 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 NME1P15531 152 aaKnown RBP4.54□□□□□ -1.68
SYNE1-220ENST00000471834 SELEP16581 610 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 PI3P19957 117 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 RHOBP62745 196 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 SPANXN5Q5MJ07 72 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 FAM231DQ6ZW35 169 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 UBE2DNLQ8IWF7 75 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 MIEN1Q9BRT3 115 aa4.54□□□□□ -1.68
SYNE1-220ENST00000471834 CDIPTO14735 213 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 SH2D1BO14796 132 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 HLA-DRB1P01911 266 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 UBE2G2P60604 165 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 TAF9Q16594 264 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF343Q6P1L6 599 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 Q6ZRM9 215 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 SFTPA1Q8IWL2 248 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 SLC22A18ASQ8N1D0 253 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 TSLPQ969D9 159 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 TP53RKQ96S44 253 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 PRSS50Q9UI38 385 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 KIR2DS1A0A191URI9 304 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 DHHO43323 396 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 KIR2DS4P43632 304 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 RBM11P57052 281 aaKnown RBP4.53□□□□□ -1.68
SYNE1-220ENST00000471834 ARF6P62330 175 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 FMODQ06828 376 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 KIR2DS1Q14954 304 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 CLEC9AQ6UXN8 241 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 ANAPC16Q96DE5 110 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 TRAV39A0A0B4J263 110 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 CTXND1A0A1B0GTU2 59 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 CD3EP07766 207 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 CST2P09228 141 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 FUT3P21217 361 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 FABP6P51161 128 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 OR2M3Q8NG83 312 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 LINC00470Q9BZP3 86 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 WDR61Q9GZS3 305 aaKnown RBP4.53□□□□□ -1.68
SYNE1-220ENST00000471834 LINC00574Q9H8X3 128 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 NUMA1Q14980 2115 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 ZNF716A6NP11 495 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 M0R143 59 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 STAG3L2P0CL84 134 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 STAG3L3P0CL85 134 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 GPR12P47775 334 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 ATP5IP56385 69 aaPredicted RBP4.53□□□□□ -1.68
SYNE1-220ENST00000471834 GATD1Q8NB37 220 aa4.53□□□□□ -1.68
SYNE1-220ENST00000471834 SLC24A4Q8NFF2 622 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms