RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 RGP1Q92546 391 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 RAX2Q96IS3 184 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 AKIRIN1Q9H9L7 192 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 TMEM262E9PQX1 116 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 H3BTX0 84 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 CDKN1AP38936 164 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 PPOXP50336 477 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 CEBPEQ15744 281 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 MARF1Q9Y4F3 1742 aaKnown RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 ZNF253O75346 499 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 LIPFP07098 398 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 CRISP2P16562 243 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 OR10J1P30954 320 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 GSX1Q9H4S2 264 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 H3BVH4 76 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 FOXH1O75593 365 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 APOBEC3AP31941 199 aaPredicted RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 BSPH1Q075Z2 132 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 WDR73Q6P4I2 378 aa13.41□□□□□ -0.26
PTPRF-201ENST00000359947 RPL29P47914 159 aaKnown RBP13.41□□□□□ -0.26
PTPRF-201ENST00000359947 OR1N2Q8NGR9 330 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 TNS1Q9HBL0 1735 aaKnown RBP13.4□□□□□ -0.26
PTPRF-201ENST00000359947 A0A0U1RQV5 110 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 GCSAMQ8N6F7 178 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 PRO1933Q9H354 126 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 COL5A3P25940 1745 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-201ENST00000359947 ODAMA1E959 279 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 ARL6IP6Q8N6S5 226 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 GPX7Q96SL4 187 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-201ENST00000359947 COL4A1P02462 1669 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 B9A039 149 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 C4orf51C9J302 202 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 ZNRF1Q8ND25 227 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 PACRGQ96M98 296 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-201ENST00000359947 MAP1LC3CQ9BXW4 147 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 MBPP02686 304 aaPredicted RBP13.4□□□□□ -0.26
PTPRF-201ENST00000359947 IER3P46695 156 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 EMP1P54849 157 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 FAM181AQ8N9Y4 354 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 CLRN3Q8NCR9 226 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 ANGPTL6Q8NI99 470 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 WDFY2Q96P53 400 aa13.4□□□□□ -0.26
PTPRF-201ENST00000359947 SUCLG1P53597 346 aaKnown RBP13.4□□□□□ -0.27
PTPRF-201ENST00000359947 SYT8Q8NBV8 401 aa13.4□□□□□ -0.27
PTPRF-201ENST00000359947 CYB5R1Q9UHQ9 305 aa13.4□□□□□ -0.27
PTPRF-201ENST00000359947 HEATR5BQ9P2D3 2071 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 NDUFA2O43678 99 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 ZNF324O75467 553 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-201ENST00000359947 LINC00869P0C866 280 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 HTN3P15516 51 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 RCC1P18754 421 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-201ENST00000359947 UNQ9370/PRO34162Q6UXP9 181 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 TET1Q8NFU7 2136 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 DLEC1Q9Y238 1755 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 PTP4A3O75365 173 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 RECKO95980 971 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 SURF2Q15527 256 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-201ENST00000359947 FAM201AQ5SY85 155 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 FAM74A4Q5TZK3 123 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 ZNF502Q8TBZ5 544 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 AMELYQ99218 206 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 MAS1LP35410 378 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 GLIPR1P48060 266 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 RSG1Q9BU20 258 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 TMEM189A5PLL7 270 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 ISOC2Q96AB3 205 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 PRSS27Q9BQR3 290 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 CLEC7AQ9BXN2 247 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 FAM53AQ6NSI3 398 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-201ENST00000359947 OR2T10Q8NGZ9 312 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 ELOVL5Q9NYP7 299 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 ST6GALNAC2Q9UJ37 374 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 PXMP4Q9Y6I8 212 aa13.39□□□□□ -0.27
PTPRF-201ENST00000359947 GVINP1Q7Z2Y8 2422 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 HIST1H1BP16401 226 aaKnown RBP13.38□□□□□ -0.27
PTPRF-201ENST00000359947 UQCC3Q6UW78 93 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 ISG15P05161 165 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 PRSS53Q2L4Q9 553 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 MFAP4P55083 255 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 SPSB2Q99619 263 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 SSBP3Q9BWW4 388 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-201ENST00000359947 CRHP06850 196 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 HLA-DRB5Q30154 266 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 SLC25A47Q6Q0C1 308 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 TBX15Q96SF7 602 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 C7orf69Q9H7B7 122 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 H7C2G1 150 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 RND2P52198 227 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 FXYD3Q14802 87 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 VAX2Q9UIW0 290 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 CXCL3P19876 107 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 C11orf44Q8N8P7 122 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 SGK494Q96LW2 274 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 NPVFQ9HCQ7 196 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 KCNK7Q9Y2U2 307 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 PHLDA3Q9Y5J5 127 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 COL24A1Q17RW2 1714 aa13.38□□□□□ -0.27
PTPRF-201ENST00000359947 CEP250Q9BV73 2442 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 A0A1W2PR77 199 aa13.37□□□□□ -0.27
PTPRF-201ENST00000359947 TMEM183BQ1AE95 376 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms