RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SPAG16Q8N0X2 631 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 PCNPQ8WW12 178 aaKnown RBP11.04□□□□□ -0.64
HMGB1-202ENST00000339872 GPR146Q96CH1 333 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 GAL3ST2Q9H3Q3 398 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 TAS2R3Q9NYW6 316 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 NSG2Q9Y328 171 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LINC00473A8K010 186 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 C17orf98A8MV24 154 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 IGKV1-5P01602 117 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 DANCRP0C864 163 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 CCL3L1P16619 93 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 GNG10P50151 68 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 RAB7AP51149 207 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LINC00205P59089 165 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 RPL39P5Q59GN2 51 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 CXorf66Q5JRM2 361 aaPredicted RBP11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LSM10Q969L4 123 aaKnown RBP11.04□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF714Q96N38 554 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 BBC3Q96PG8 261 aaPredicted RBP11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LINC00574Q9H8X3 128 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LAMP3Q9UQV4 416 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LRBAP50851 2863 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 POLR2GP62487 172 aaKnown RBP eCLIP11.03□□□□□ -0.64
HMGB1-202ENST00000339872 TMEM30BQ3MIR4 351 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 CT45A1Q5HYN5 189 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 AVPI1Q5T686 147 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 TMEM200BQ69YZ2 307 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 DTX2Q86UW9 622 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 CT45A3Q8NHU0 189 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 MAGT1Q9H0U3 335 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 UBTD1Q9HAC8 227 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 USF3Q68DE3 2245 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 CFAP46Q8IYW2 2715 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 A0A1B0GU03 582 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 M0R1X1 148 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 ITGB1BP1O14713 200 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 SSSCA1O60232 199 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 PROP1O75360 226 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 S1PR2O95136 353 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 IGHV2-70P01814 119 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 IGFBP2P18065 325 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 DUTP33316 252 aaKnown RBP11.03□□□□□ -0.64
HMGB1-202ENST00000339872 ERVFRD-1P60508 538 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 DMBX1Q8NFW5 382 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 SCARB1Q8WTV0 552 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 PLEKHA2Q9HB19 425 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 LPAR3Q9UBY5 353 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 CACNG5Q9UF02 275 aa11.03□□□□□ -0.64
HMGB1-202ENST00000339872 RPUSD1Q9UJJ7 312 aaKnown RBP11.03□□□□□ -0.64
HMGB1-202ENST00000339872 SLC25A6P12236 298 aa11.02□□□□□ -0.64
HMGB1-202ENST00000339872 BRWD1-AS2P59051 145 aa11.02□□□□□ -0.64
HMGB1-202ENST00000339872 RAB14P61106 215 aa11.02□□□□□ -0.64
HMGB1-202ENST00000339872 Q6ZRM9 215 aa11.02□□□□□ -0.64
HMGB1-202ENST00000339872 TCTEX1D1Q8N7M0 179 aa11.02□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF439Q8NDP4 499 aa11.02□□□□□ -0.64
HMGB1-202ENST00000339872 RPS10-NUDT3A0A1W2PQS6 291 aa11.02□□□□□ -0.65
HMGB1-202ENST00000339872 KRASP01116 189 aa11.02□□□□□ -0.65
HMGB1-202ENST00000339872 PVALBP20472 110 aaPredicted RBP11.02□□□□□ -0.65
HMGB1-202ENST00000339872 G6PCP35575 357 aa11.02□□□□□ -0.65
HMGB1-202ENST00000339872 NCR3LG1Q68D85 454 aa11.02□□□□□ -0.65
HMGB1-202ENST00000339872 NEU4Q8WWR8 484 aaPredicted RBP11.02□□□□□ -0.65
HMGB1-202ENST00000339872 GSX2Q9BZM3 304 aa11.02□□□□□ -0.65
HMGB1-202ENST00000339872 SAA2-SAA4A0A096LPE2 208 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 WRBO00258 174 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 PITX3O75364 302 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 SAA2P0DJI9 122 aaPredicted RBP11.01□□□□□ -0.65
HMGB1-202ENST00000339872 DAOP14920 347 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 P2RY1P47900 373 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 ID3Q02535 119 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 CLLU1Q5K131 121 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 HEPN1Q6WQI6 88 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 LYG1Q8N1E2 194 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 CYTL1Q9NRR1 136 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 A6NNC1 897 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 FSTL3O95633 263 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 CDKN1AP38936 164 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 VAMP2P63027 116 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 CLEC9AQ6UXN8 241 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 OR10A7Q8NGE5 316 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 SMIM3Q9BZL3 60 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 FAM212BQ9NTI7 297 aaPredicted RBP11.01□□□□□ -0.65
HMGB1-202ENST00000339872 FBXL17Q9UF56 701 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 MMP24Q9Y5R2 645 aa11.01□□□□□ -0.65
HMGB1-202ENST00000339872 RAB29O14966 203 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 PPIHO43447 177 aaKnown RBP11□□□□□ -0.65
HMGB1-202ENST00000339872 GPR137BO60478 399 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 FCGR3BO75015 233 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 ATG12O94817 140 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 TPT1P13693 172 aaKnown RBP11□□□□□ -0.65
HMGB1-202ENST00000339872 CAV2P51636 162 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 TMEM33P57088 247 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 C1orf229Q6ZS94 237 aaPredicted RBP11□□□□□ -0.65
HMGB1-202ENST00000339872 ODF3L1Q8IXM7 274 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 STOML3Q8TAV4 291 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 C11orf1Q9H5F2 150 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 MRPS11P82912 194 aaKnown RBP11□□□□□ -0.65
HMGB1-202ENST00000339872 FAM74A1Q5RGS3 127 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 SLC25A48Q6ZT89 311 aaKnown RBP11□□□□□ -0.65
HMGB1-202ENST00000339872 OR2C3Q8N628 320 aa11□□□□□ -0.65
HMGB1-202ENST00000339872 ZNF436-AS1Q8NC38 126 aaPredicted RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms