RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ZNF645Q8N7E2 425 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 NECAP1Q8NC96 275 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 CDH20Q9HBT6 801 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 IL17BQ9UHF5 180 aa18.49■□□□□ 0.55
SHMT1-201ENST00000316694 KLF13Q9Y2Y9 288 aaPredicted RBP18.49■□□□□ 0.55
SHMT1-201ENST00000316694 ZNF729A6NN14 1252 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-201ENST00000316694 KLRC4-KLRK1H3BQV0 150 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 RPL30P62888 115 aaKnown RBP18.48■□□□□ 0.55
SHMT1-201ENST00000316694 OR52L2PQ8NGH6 319 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 GALMQ96C23 342 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 NAT8Q9UHE5 227 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 RAC2P15153 192 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 IL2RGP31785 369 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 MRPL49Q13405 166 aaKnown RBP18.48■□□□□ 0.55
SHMT1-201ENST00000316694 TMEM164Q5U3C3 297 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 SLC25A40Q8TBP6 338 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 HSPB7Q9UBY9 170 aa18.48■□□□□ 0.55
SHMT1-201ENST00000316694 TRBV24-1A0A075B6N3 115 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 MSMO1Q15800 293 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 BTNL3Q6UXE8 466 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 CTDSP1Q9GZU7 261 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 C21orf140B9A014 251 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 C12orf77C9JDV5 145 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 S1PR2O95136 353 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 TMEM241Q24JQ0 296 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 C16orf82Q7Z2V1 217 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 C5orf30Q96GV9 206 aa18.47■□□□□ 0.55
SHMT1-201ENST00000316694 TMEM30CPA0ZSE6 113 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 ODAMA1E959 279 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 WNT9BO14905 357 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 TUBG1P23258 451 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 PSMB3P49720 205 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 AESQ08117 197 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 LINC00469Q8N7U9 141 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 GATAD1Q8WUU5 269 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 TIMM9Q9Y5J7 89 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 LRRC30A6NM36 301 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 TGOLN2O43493 480 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 TFF1P04155 84 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 ZNF883P0CG24 379 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 FGF7P21781 194 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 UBE2NP61088 152 aaKnown RBP18.46■□□□□ 0.55
SHMT1-201ENST00000316694 ZNF826PQ6ZT77 177 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 OBP2BQ9NPH6 170 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 SPRR3Q9UBC9 169 aa18.46■□□□□ 0.55
SHMT1-201ENST00000316694 ASPMQ8IZT6 3477 aa18.46■□□□□ 0.54
SHMT1-201ENST00000316694 RBMXL2O75526 392 aaKnown RBP18.45■□□□□ 0.54
SHMT1-201ENST00000316694 PSG7Q13046 419 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 SPINK9Q5DT21 86 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 CYP2G1PQ6ZSU1 146 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 OR10A7Q8NGE5 316 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 OR10G9Q8NGN4 311 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 OR10G7Q8NGN6 311 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 ZDHHC16Q969W1 377 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 TMEM147Q9BVK8 224 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 GFOD1Q9NXC2 390 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 GAB2Q9UQC2 676 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 PHOX2AO14813 284 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 ZG16O60844 167 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 LYZL6O75951 148 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 FIP1L1Q6UN15 594 aaKnown RBP18.45■□□□□ 0.54
SHMT1-201ENST00000316694 MDS2Q8NDY4 140 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 NINJ1Q92982 152 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 S100PBPQ96BU1 408 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 PRDM13Q9H4Q3 707 aa18.45■□□□□ 0.54
SHMT1-201ENST00000316694 CTNNBIP1Q9NSA3 81 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-201ENST00000316694 C17orf98A8MV24 154 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 KBTBD11O94819 623 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 HBZP02008 142 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 TFF3Q07654 80 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 BSXQ3C1V8 233 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 FFAR4Q5NUL3 377 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 OR4F5Q8NH21 305 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 OR4F4Q96R69 305 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 TRGV5A0A0B4J1U4 118 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 GATCO43716 136 aaKnown RBP18.44■□□□□ 0.54
SHMT1-201ENST00000316694 LY86O95711 162 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 HIST1H1BP16401 226 aaKnown RBP18.44■□□□□ 0.54
SHMT1-201ENST00000316694 PMP22Q01453 160 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 RNFT1Q5M7Z0 435 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 GCNT2Q8N0V5 402 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 OR10P1Q8NGE3 313 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 OR4X1Q8NH49 305 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 MRGPRDQ8TDS7 321 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 DTD1Q8TEA8 209 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 PACRGQ96M98 296 aaPredicted RBP18.44■□□□□ 0.54
SHMT1-201ENST00000316694 AGMATQ9BSE5 352 aa18.44■□□□□ 0.54
SHMT1-201ENST00000316694 CTXND1A0A1B0GTU2 59 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 GABRA2P47869 451 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 DEFA6Q01524 100 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 CATR1Q13166 79 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 CLEC12BQ2HXU8 276 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 PARLQ9H300 379 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 UFSP2Q9NUQ7 469 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 DEFA4P12838 97 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 CD59P13987 128 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 CD46P15529 392 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 MPV17P39210 176 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 LINC00205P59089 165 aa18.43■□□□□ 0.54
SHMT1-201ENST00000316694 RPL23P62829 140 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms