RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 RAB18Q9NP72 206 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 TCF19Q9Y242 345 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 MRPS7Q9Y2R9 242 aaKnown RBP14.3□□□□□ -0.12
CLN3-247ENST00000636351 IGKV1-6A0A0C4DH72 117 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 GAPDHP04406 335 aaKnown RBP14.29□□□□□ -0.12
CLN3-247ENST00000636351 ELK1P19419 428 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 HERPUD1Q15011 391 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 SRSF7Q16629 238 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLN3-247ENST00000636351 LIAT1Q6ZQX7 453 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 Q6ZSV7 163 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 MOB3BQ86TA1 216 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 C1QL4Q86Z23 238 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 TGIF2LXQ8IUE1 241 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 DRAM1Q8N682 238 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 OR56B4Q8NH76 319 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 CAPSLQ8WWF8 208 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 EDARADDQ8WWZ3 215 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 CMTM3Q96MX0 182 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 PARP12Q9H0J9 701 aaKnown RBP14.29□□□□□ -0.12
CLN3-247ENST00000636351 IFT46Q9NQC8 304 aa14.29□□□□□ -0.12
CLN3-247ENST00000636351 RSL24D1Q9UHA3 163 aaKnown RBP14.29□□□□□ -0.12
CLN3-247ENST00000636351 IGKV1D-8A0A087WSZ0 117 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 A0A1W2PPI3 338 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 MEIS3P1A6NDR6 274 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 FCER2P06734 321 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 CBX5P45973 191 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 ARPC4P59998 168 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 ZNF816Q0VGE8 651 aaPredicted RBP14.28□□□□□ -0.12
CLN3-247ENST00000636351 LY6G6FQ5SQ64 297 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 PIFOQ8TCI5 191 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 RTN4IP1Q8WWV3 396 aaPredicted RBP14.28□□□□□ -0.12
CLN3-247ENST00000636351 RDH8Q9NYR8 311 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 ADAM30Q9UKF2 790 aa14.28□□□□□ -0.12
CLN3-247ENST00000636351 IGHV3-72A0A0B4J1Y9 119 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 IGHV1-3A0A0C4DH29 117 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 A6NDX4 124 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 TXNL1O43396 289 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 ZNF137PP52743 207 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 HES1Q14469 280 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 Q6ZS49 121 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 SNX29P2Q8IUI4 249 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 GVQW1Q8N7I0 195 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 DCUN1D5Q9BTE7 237 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 C6orf62Q9GZU0 229 aaPredicted RBP14.27□□□□□ -0.13
CLN3-247ENST00000636351 RBM38Q9H0Z9 239 aaKnown RBP14.27□□□□□ -0.13
CLN3-247ENST00000636351 IFI27L2Q9H2X8 130 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 EXTL2Q9UBQ6 330 aa14.27□□□□□ -0.13
CLN3-247ENST00000636351 RBM7Q9Y580 266 aaKnown RBP14.27□□□□□ -0.13
CLN3-247ENST00000636351 SAA2-SAA4A0A096LPE2 208 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 TRBV6-7A0A0A0MS04 114 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 CHST1O43916 411 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 DIRAS3O95661 229 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 SNRNP70P08621 437 aaKnown RBP14.26□□□□□ -0.13
CLN3-247ENST00000636351 FAM106CPP0CH98 169 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 SAA2P0DJI9 122 aaPredicted RBP14.26□□□□□ -0.13
CLN3-247ENST00000636351 PRSS3P35030 304 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 OR3A3P47888 321 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 LAX1Q8IWV1 398 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 BEST4Q8NFU0 473 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 FAM110DQ8TAY7 271 aaPredicted RBP14.26□□□□□ -0.13
CLN3-247ENST00000636351 ST6GALNAC6Q969X2 333 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 C11orf54Q9H0W9 315 aaPredicted RBP14.26□□□□□ -0.13
CLN3-247ENST00000636351 C16orf95Q9H693 158 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 PIPOXQ9P0Z9 390 aa14.26□□□□□ -0.13
CLN3-247ENST00000636351 RAB29O14966 203 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 LANCL1O43813 399 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 CTXN2P0C2S0 81 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 GPR12P47775 334 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 CNIH2Q6PI25 160 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 CCBE1Q6UXH8 406 aaPredicted RBP14.25□□□□□ -0.13
CLN3-247ENST00000636351 HOGA1Q86XE5 327 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 OR4C13Q8NGP0 309 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 ABHD14BQ96IU4 210 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 S1PR3Q99500 378 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 MRPL20Q9BYC9 149 aaKnown RBP14.25□□□□□ -0.13
CLN3-247ENST00000636351 NPFFR1Q9GZQ6 430 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 ANXA10Q9UJ72 324 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 ZNF221Q9UK13 617 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 RNF150Q9ULK6 438 aa14.25□□□□□ -0.13
CLN3-247ENST00000636351 CTDSP2O14595 271 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 ITGB1BP1O14713 200 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 IGKV1D-33P01593 117 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 IGKV1-33P01594 117 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 TMEM11P17152 192 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 C2orf68Q2NKX9 166 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 RPL39P5Q59GN2 51 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 RNASE12Q5GAN4 147 aaKnown RBP14.24□□□□□ -0.13
CLN3-247ENST00000636351 ODF3L1Q8IXM7 274 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 MCFD2Q8NI22 146 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 CFHR4Q92496 578 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 AKR1E2Q96JD6 320 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 SLC25A33Q9BSK2 321 aa14.24□□□□□ -0.13
CLN3-247ENST00000636351 ZNF701M0R085 212 aaPredicted RBP14.23□□□□□ -0.13
CLN3-247ENST00000636351 TSPAN9O75954 239 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 OR8U9P0C7N5 309 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 HNF4GQ14541 408 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 ARSJQ5FYB0 599 aaPredicted RBP14.23□□□□□ -0.13
CLN3-247ENST00000636351 FAM71F2Q6NXP2 309 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 ZNF833PQ6ZTB9 187 aa14.23□□□□□ -0.13
CLN3-247ENST00000636351 H1FOOQ8IZA3 346 aaPredicted RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms