RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 DCTN2Q13561 401 aaKnown RBP14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 P2RY14Q15391 338 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 C5orf24Q7Z6I8 188 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 SETD6Q8TBK2 473 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 RAX2Q96IS3 184 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 KCTD7Q96MP8 289 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 GFI1Q99684 422 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 KCNK15Q9H427 330 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 AK3Q9UIJ7 227 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 BLOC1S6Q9UL45 172 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 AK6Q9Y3D8 172 aaKnown RBP14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 V9GY05 133 aa14.94□□□□□ -0.02
CCDC28A-203ENST00000617445 OR5H14A6NHG9 310 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 ATP6V1G2O95670 118 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 SLC2A2P11168 524 aaPredicted RBP14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 CALRP27797 417 aaKnown RBP14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 C5orf64Q2M2E5 130 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 LIN54Q6MZP7 749 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 OR56B1Q8NGI3 324 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 C4orf3Q8WVX3 66 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 FAM3DQ96BQ1 224 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 OR51J1Q9H342 316 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 C12orf4Q9NQ89 552 aa14.93□□□□□ -0.02
CCDC28A-203ENST00000617445 FOXI3A8MTJ6 420 aaPredicted RBP14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 ST8SIA5O15466 376 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 RBBP9O75884 186 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 NDUFA3O95167 84 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 HOXD3P31249 432 aaPredicted RBP14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 FABP5Q01469 135 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 TBCEQ15813 527 aaPredicted RBP14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 TMEM65Q6PI78 240 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 LCNL1Q6ZST4 164 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 OR5M8Q8NGP6 311 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 RNF5Q99942 180 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 Q9N2K0 584 aa14.92□□□□□ -0.02
CCDC28A-203ENST00000617445 WI2-2373I1.2A0A1W2PRP0 233 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 HSPA12AO43301 675 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 PPIFP30405 207 aaKnown RBP14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 CEACAM6P40199 344 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 VEGFCP49767 419 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 TMEM50BP56557 158 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 HLA-DRB3P79483 266 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 C2orf76Q3KRA6 126 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 DEFB121Q5J5C9 76 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 ZNF367Q7RTV3 350 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 MYOZ3Q8TDC0 251 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 PTX4Q96A99 478 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 RITA1Q96K30 269 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 UBE2E2Q96LR5 201 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 CMSS1Q9BQ75 279 aaKnown RBP14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 AGMATQ9BSE5 352 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 RAB22AQ9UL26 194 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 RAB26Q9ULW5 256 aa14.91□□□□□ -0.02
CCDC28A-203ENST00000617445 IGHV7-81A0A0B4J1V7 117 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 TRAV1-2A0A0B4J238 106 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 PDCD5O14737 125 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 DENRO43583 198 aaKnown RBP14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 RAMP3O60896 148 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 CT45A6P0DMU7 189 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 CT45A5P0DMU8 189 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 CT45A7P0DMV0 189 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 ZNF660Q6AZW8 331 aaPredicted RBP14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 OR5AN1Q8NGI8 311 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 ARHGAP5-AS1Q96IT6 56 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 C11orf54Q9H0W9 315 aaPredicted RBP14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 WASHC3Q9Y3C0 194 aa14.9□□□□□ -0.02
CCDC28A-203ENST00000617445 TRAV41A0A0B4J266 112 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 LDLRAD4O15165 306 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 ATP6V0E1O15342 81 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 MRPS14O60783 128 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 IGLV1-40P01703 118 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 CNTFRP26992 372 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 MAP2K4P45985 399 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 RAB25P57735 213 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 MRPS15P82914 257 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 DGCR2P98153 550 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 RUNX1Q01196 453 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 RPL39P5Q59GN2 51 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 C9orf66Q5T8R8 295 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 FAM131AQ6UXB0 335 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 TCTEX1D1Q8N7M0 179 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 RBMXL1Q96E39 390 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 CNBD2Q96M20 576 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 DUX3Q96PT4 197 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 HDHD3Q9BSH5 251 aaPredicted RBP14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 PECRQ9BY49 303 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 PARP11Q9NR21 331 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 VSIG4Q9Y279 399 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 WSB1Q9Y6I7 421 aa14.89□□□□□ -0.03
CCDC28A-203ENST00000617445 TRDCB7Z8K6 153 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 H0YJW9 148 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 RRHO14718 337 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 GSTP1P09211 210 aaKnown RBP14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 SCTP09683 121 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 GALP22466 123 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 SERPINB10P48595 397 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 CRIP2P52943 208 aaPredicted RBP14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 FHL3Q13643 280 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 DEFB136Q30KP8 78 aa14.88□□□□□ -0.03
CCDC28A-203ENST00000617445 ZNF491Q8N8L2 437 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms