RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 IGKV1D-8A0A087WSZ0 117 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 TRAV14DV4A0A0A6YYC5 116 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 NEURL1O76050 574 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 CD8AP01732 235 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 TMPRSS3P57727 454 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 FABP9Q0Z7S8 132 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 TMEM241Q24JQ0 296 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 OR8G5Q8NG78 346 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 AQP10Q96PS8 301 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 NUDT16L1Q9BRJ7 211 aaKnown RBP13.92□□□□□ -0.18
CUX1-213ENST00000549414 RTBDNQ9BSG5 229 aaPredicted RBP13.92□□□□□ -0.18
CUX1-213ENST00000549414 AHRRA9YTQ3 701 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 CLDN34H7C241 214 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 GYPAP02724 150 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 TMEM187Q14656 261 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 HSD17B10Q99714 261 aaKnown RBP13.92□□□□□ -0.18
CUX1-213ENST00000549414 HLA-GP17693 338 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 LHX2P50458 406 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 RAB1CQ92928 201 aa13.92□□□□□ -0.18
CUX1-213ENST00000549414 E9PQ18 207 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 H0Y980 276 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 SNRPCP09234 159 aaKnown RBP13.91□□□□□ -0.18
CUX1-213ENST00000549414 DEFA6Q01524 100 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 HABP2Q14520 560 aaPredicted RBP13.91□□□□□ -0.18
CUX1-213ENST00000549414 C1orf185Q5T7R7 199 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 FGF2P09038 288 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 COX5BP10606 129 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 CLDN18P56856 261 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 OR5P3Q8WZ94 311 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 CEACAM1P13688 526 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 HOXA6P31267 233 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 TNFSF10P50591 281 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 RPL31P62899 125 aaKnown RBP13.91□□□□□ -0.18
CUX1-213ENST00000549414 LY6G6FQ5SQ64 297 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 SELENOHQ8IZQ5 122 aaKnown RBP13.91□□□□□ -0.18
CUX1-213ENST00000549414 FGFRL1Q8N441 504 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 FAM122AQ96E09 287 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 TM2D1Q9BX74 207 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 LINC00470Q9BZP3 86 aa13.91□□□□□ -0.18
CUX1-213ENST00000549414 ZNF331Q9NQX6 463 aaPredicted RBP13.91□□□□□ -0.18
CUX1-213ENST00000549414 PROB1E7EW31 1015 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 H0Y8G0 127 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 NAT2P11245 290 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 SSTR5P35346 364 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 ERVFC1-1P60608 527 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 TMEM56Q96MV1 263 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 REPIN1Q9BWE0 567 aaKnown RBP13.9□□□□□ -0.18
CUX1-213ENST00000549414 PKIBQ9C010 78 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 ZNF665Q9H7R5 613 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 RNF222A6NCQ9 220 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 G3V3Q6 166 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 ADH4P08319 380 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 ZNF66Q6ZN08 573 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 CRYBA1P05813 215 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 ZNF735P0CB33 412 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 NTF3P20783 257 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 MPV17P39210 176 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 C1QTNF12Q5T7M4 302 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 ZNF439Q8NDP4 499 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 TMEM45BQ96B21 275 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 CCDC168Q8NDH2 2452 aa13.9□□□□□ -0.18
CUX1-213ENST00000549414 FAM90A10PA6NDY2 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A18PA6NE21 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A16PA6NEW6 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A20PA6NIJ5 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A8PA6NJQ4 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A7PA6NKC0 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A22PA8MWA6 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A12PA8MX19 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A5PA8MXJ8 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A23PA8MXZ1 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 GAPDHP04406 335 aaKnown RBP13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A15PP0C7V4 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A13PP0C7W8 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A14PP0C7W9 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 FAM90A24PP0C7X0 464 aa13.9□□□□□ -0.19
CUX1-213ENST00000549414 RYDENQ9NUL5 291 aaKnown RBP13.9□□□□□ -0.19
CUX1-213ENST00000549414 BPIFB3P59826 476 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 Q0VFX4 171 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 S100A7AQ86SG5 101 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 ZCCHC14Q8WYQ9 949 aaKnown RBP13.89□□□□□ -0.19
CUX1-213ENST00000549414 BTF3L4Q96K17 158 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 H3BQ15 152 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 MGST3O14880 152 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 RAB4AP20338 218 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 DLK1P80370 383 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 ABLIM2Q6H8Q1 611 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 Q6ZT83 130 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 CYB561D1Q8N8Q1 229 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 ABHD17AQ96GS6 310 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 FAM210BQ96KR6 192 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 TMEM204Q9BSN7 226 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 ZDHHC11Q9H8X9 412 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 NPTNQ9Y639 398 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 PAGE4O60829 102 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 RBP4P02753 201 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 DBX2Q6ZNG2 339 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 HARBI1Q96MB7 349 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 C1QTNF5Q9BXJ0 243 aa13.89□□□□□ -0.19
CUX1-213ENST00000549414 H3F3AP84243 136 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms