RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IGHV1-45A0A0A0MS14 117 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 KLRC4-KLRK1H3BQV0 150 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 C1QL1O75973 258 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 HLA-HP01893 362 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 SELEP16581 610 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 CCNOP22674 350 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 GRNP28799 593 aaKnown RBP4.5□□□□□ -1.69
USP28-213ENST00000544967 TMPRSS3P57727 454 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 EGR4Q05215 589 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 P2RY6Q15077 328 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 EXT1Q16394 746 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 VWA1Q6PCB0 445 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 OR5AS1Q8N127 324 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 TMEM116Q8NCL8 245 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 TSSK2Q96PF2 358 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 PECRQ9BY49 303 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 RAB1BQ9H0U4 201 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 ZMAT4Q9H898 229 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 VDAC3Q9Y277 283 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 IGHV2OR16-5A0A0B4J2B6 119 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 A0A1W2PQD3 144 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 CCL25O15444 150 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 MLNRO43193 412 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 RAMP3O60896 148 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 RAD51DO75771 328 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 IGLV3-1P01715 115 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 TTRP02766 147 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 COX6A1P12074 109 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 WT1P19544 449 aaPredicted RBP4.5□□□□□ -1.69
USP28-213ENST00000544967 AADACP22760 399 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 ID3Q02535 119 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 PCOLCEQ15113 449 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 PSG3Q16557 428 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 ZNF787Q6DD87 383 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 GLIPR1L1Q6UWM5 242 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 WDFY1Q8IWB7 410 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 ZNF295-AS1Q8N0V1 137 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 ST6GALNAC6Q969X2 333 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 RERGQ96A58 199 aaPredicted RBP4.5□□□□□ -1.69
USP28-213ENST00000544967 SH2D2AQ9NP31 389 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 KLHL13Q9P2N7 655 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 ANXA10Q9UJ72 324 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 SPEGQ15772 3267 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 EML6Q6ZMW3 1958 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 GON4LQ3T8J9 2241 aa4.5□□□□□ -1.69
USP28-213ENST00000544967 NPIPA5A0A0B4J1W7 369 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 IGHV1-69-2A0A0G2JMI3 117 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 IGSF23A1L1A6 192 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 A6NNC1 897 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 TGFBR3LH3BV60 316 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 NDUFB8O95169 186 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 IGKV1D-16P01601 117 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 IGKV3-11P04433 115 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 HPNP05981 417 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZNF728P0DKX0 622 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 MSR1P21757 451 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 OTX1P32242 354 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 RPL23P62829 140 aaKnown RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 MZT1Q08AG7 82 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ARFRP1Q13795 201 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 C4orf17Q53FE4 359 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 DOK3Q7L591 496 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZAR1Q86SH2 424 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 MYPOPQ86VE0 399 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 BOD1L2Q8IYS8 172 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 CMTM2Q8TAZ6 248 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZCCHC10Q8TBK6 192 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ALKBH3Q96Q83 286 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 CABIN1Q9Y6J0 2220 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 SOCS1O15524 211 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 NPIPB7O75200 414 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 IFNA5P01569 189 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 H2BFMP0C1H6 154 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 NBEAP1P0C6P0 100 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZNF823P16415 610 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZNF20P17024 532 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 NKX2-1P43699 371 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 CEBPGP53567 150 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 PIGPP57054 158 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 TMEM41BQ5BJD5 291 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ASCL4Q6XD76 172 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 COMMD2Q86X83 199 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 C1orf174Q8IYL3 243 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZFP62Q8NB50 900 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 OR52R1Q8NGF1 315 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ZNF721Q8TF20 911 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 RTN4IP1Q8WWV3 396 aaPredicted RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 SLAMF6Q96DU3 332 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 ARHGAP5-AS1Q96IT6 56 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 FOXN4Q96NZ1 517 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 RAB40CQ96S21 281 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 RASL10BQ96S79 203 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 PARP12Q9H0J9 701 aaKnown RBP4.49□□□□□ -1.69
USP28-213ENST00000544967 EMC9Q9Y3B6 208 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 KNL1Q8NG31 2342 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 LOC105371242A0A075B767 164 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 HAX1O00165 279 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 MSTNO14793 375 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 FGF17O60258 216 aa4.49□□□□□ -1.69
USP28-213ENST00000544967 SERPINA7P05543 415 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms