RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ZNRF1Q8ND25 227 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 MEGF10Q96KG7 1140 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 MRPL37Q9BZE1 423 aaKnown RBP13.64□□□□□ -0.23
COL4A1-204ENST00000543140 Q9UFV3 132 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 C9JQL5 133 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 PRRG2O14669 202 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 ZNF737O75373 536 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 WNT2P09544 360 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 ATP6V0CP27449 155 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 TMEM267Q0VDI3 215 aaPredicted RBP13.64□□□□□ -0.23
COL4A1-204ENST00000543140 ZNF816Q0VGE8 651 aaPredicted RBP13.64□□□□□ -0.23
COL4A1-204ENST00000543140 ZNF266Q14584 549 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 ZNF273Q14593 569 aa13.64□□□□□ -0.23
COL4A1-204ENST00000543140 LSM10Q969L4 123 aaKnown RBP13.64□□□□□ -0.23
COL4A1-204ENST00000543140 TLN1Q9Y490 2541 aaKnown RBP13.64□□□□□ -0.23
COL4A1-204ENST00000543140 CCKARP32238 428 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 TDGF1P3P51864 188 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 FGFRL1Q8N441 504 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 OR2G3Q8NGZ4 309 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 COL25A1Q9BXS0 654 aaPredicted RBP13.63□□□□□ -0.23
COL4A1-204ENST00000543140 PTPRQQ9UMZ3 2332 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 ST8SIA5O15466 376 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 KRASP01116 189 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 SLC25A6P12236 298 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 MMP9P14780 707 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 RUNX1Q01196 453 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 PRR30Q53SZ7 412 aaPredicted RBP13.63□□□□□ -0.23
COL4A1-204ENST00000543140 SVBPQ8N300 66 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 FAM213BQ8TBF2 198 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 C19orf12Q9NSK7 152 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 PSG11Q9UQ72 335 aa13.63□□□□□ -0.23
COL4A1-204ENST00000543140 RNF212BA8MTL3 300 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 DNASE2O00115 360 aaPredicted RBP13.62□□□□□ -0.23
COL4A1-204ENST00000543140 IGHV3-7P01780 117 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 SFTA3P0C7M3 94 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 CD40P25942 277 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 GFRALQ6UXV0 394 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 LURAP1Q96LR2 239 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 ABHD14AQ9BUJ0 271 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 SMG1Q96Q15 3661 aaKnown RBP13.62□□□□□ -0.23
COL4A1-204ENST00000543140 PIGBOS1A0A0B4J2F0 54 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 SYNGR2O43760 224 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 G6PCP35575 357 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 RPL23AP62750 156 aaKnown RBP13.62□□□□□ -0.23
COL4A1-204ENST00000543140 TMEM88Q6PEY1 159 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 LYPD6BQ8NI32 183 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 TCTEX1D2Q8WW35 142 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 ADGRG4Q8IZF6 3080 aa13.62□□□□□ -0.23
COL4A1-204ENST00000543140 IGLV3-9A0A075B6K5 115 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 C17orf98A8MV24 154 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 C15orf65H3BRN8 121 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 SPINT2O43291 252 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 CD5P06127 495 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 SELLP14151 372 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 EDDM3BP56851 147 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 BAXQ07812 192 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 TBR1Q16650 682 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 C10orf91Q5T1B1 145 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 STX12Q86Y82 276 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 RAB40CQ96S21 281 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 ODAMA1E959 279 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 TXNL1O43396 289 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 BRWD1-AS2P59051 145 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 WFDC8Q8IUA0 241 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 SPAG16Q8N0X2 631 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 OR10Z1Q8NGY1 313 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 SEC11CQ9BY50 192 aa13.61□□□□□ -0.23
COL4A1-204ENST00000543140 METTL15P1P0C7V9 234 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 SNCAP37840 140 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 C3orf36Q3SXR2 165 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 Q3ZCU0 254 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 KCNJ16Q9NPI9 418 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 PSENENQ9NZ42 101 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 CARHSP1Q9Y2V2 147 aaKnown RBP13.6□□□□□ -0.23
COL4A1-204ENST00000543140 S1PR2O95136 353 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 CLDN1O95832 211 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 CFHR2P36980 270 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 DVL1P1P54792 670 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-204ENST00000543140 SELENOVP59797 346 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 EIF4EBP1Q13541 118 aaPredicted RBP13.6□□□□□ -0.23
COL4A1-204ENST00000543140 ZBTB34Q8NCN2 500 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 DEFB108BQ8NET1 73 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 GNG12Q9UBI6 72 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 SSUH2Q9Y2M2 353 aa13.6□□□□□ -0.23
COL4A1-204ENST00000543140 LINC00473A8K010 186 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 SULT1A1P50225 295 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 PPT1P50897 306 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 RAB5CP51148 216 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 RPS23P62266 143 aaKnown RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 TNFAIP6P98066 277 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 MRGPRGQ86SM5 289 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 TGIF2LYQ8IUE0 185 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 SNRNP40Q96DI7 357 aaKnown RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 SNX22Q96L94 193 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 ATP5SQ99766 215 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 EIF5A2Q9GZV4 153 aaKnown RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 GCM1Q9NP62 436 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 STRAPQ9Y3F4 350 aaKnown RBP13.59□□□□□ -0.23
COL4A1-204ENST00000543140 MMP24Q9Y5R2 645 aa13.59□□□□□ -0.23
COL4A1-204ENST00000543140 WSB1Q9Y6I7 421 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms