RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 PAX1P15863 534 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 CD34P28906 385 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 PMELP40967 661 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 KIR2DS4P43632 304 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 GABRA2P47869 451 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 FXYD4P59646 89 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 SNRPD2P62316 118 aaKnown RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 VAMP2P63027 116 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 HLA-DRB3P79483 266 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 GAGE5Q13069 117 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 GAGE6Q13070 117 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 MAB21L1Q13394 359 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 KIR2DS1Q14954 304 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ATXN7L3Q14CW9 347 aaPredicted RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 GRK1Q15835 563 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ABCA11PQ4W5N1 156 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 BEX5Q5H9J7 111 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 NCMAPQ5T1S8 102 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 WDR82Q6UXN9 313 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 GLDNQ6ZMI3 551 aaPredicted RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ACP7Q6ZNF0 438 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 Q6ZR03 302 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ZNF826PQ6ZT77 177 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 LRP11Q86VZ4 500 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ZNF565Q8N9K5 539 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ASCC1Q8N9N2 400 aaKnown RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 SUMF2Q8NBJ7 301 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 UXS1Q8NBZ7 420 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR52B4Q8NGK2 314 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR10Z1Q8NGY1 313 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR6F1Q8NGZ6 308 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 MARCH1Q8TCQ1 289 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 GTF3AQ92664 365 aaKnown RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 TOMM40LQ969M1 308 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 PIK3IP1Q96FE7 263 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 WFIKKN1Q96NZ8 548 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR2V2Q96R30 315 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 LITAFQ99732 161 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 NRIP2Q9BQI9 281 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 SEC22CQ9BRL7 303 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ZNF2Q9BSG1 426 aaPredicted RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 MRPL37Q9BZE1 423 aaKnown RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 RIMS4Q9H426 269 aaPredicted RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 RCC2Q9P258 522 aaKnown RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 ZNF230Q9UIE0 474 aaPredicted RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 TRAPPC2LQ9UL33 140 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 MGAT4AQ9UM21 535 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 FLVCR2Q9UPI3 526 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 HCFC1P51610 2035 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 CEP250Q9BV73 2442 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 DMXL1Q9Y485 3027 aa3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 HEATR1Q9H583 2144 aaKnown RBP3.13□□□□□ -1.91
HMGB3P20-201ENST00000417997 FREM2Q5SZK8 3169 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 URB1O60287 2271 aaKnown RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 IGHV3OR15-7A0A075B7D8 119 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 TRAV24A0A0B4J272 114 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 A0A1B0GU03 582 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 LRRC30A6NM36 301 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 SNRPGP15A8MWD9 76 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 SMIM1B2RUZ4 78 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 SRRM5B3KS81 715 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 SLC33A1O00400 549 aaPredicted RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 GOSR2O14653 212 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 BET1O15155 118 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 FABP7O15540 132 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 CIDEAO60543 219 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 NOS1APO75052 506 aaPredicted RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 IGHV1-46P01743 117 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR4A8P0C604 315 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR4E1P0C645 316 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 ZNF735P0CB33 412 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 ZNF728P0DKX0 622 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR5H8P0DN80 308 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 AKR1C4P17516 323 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 S100GP29377 79 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 CD80P33681 288 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 RBMXP38159 391 aaKnown RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 UQCRFS1P47985 274 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 KCNJ3P48549 501 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 CEBPDP49716 269 aaPredicted RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 NPY4RP50391 375 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 KRTAP10-12P60413 245 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 UBE2MP61081 183 aaKnown RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 RPL24P83731 157 aaKnown RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 BAMBIQ13145 260 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 SNTB1Q13884 538 aaKnown RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 EDDM3AQ14507 147 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 FCN2Q15485 313 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 MPPED2Q15777 294 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 ADIPOQQ15848 244 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 C6orf183Q5T699 404 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 SHEQ5VZ18 495 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 TRAT1Q6PIZ9 186 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 C17orf107Q6ZR85 190 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 LYG2Q86SG7 212 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 C12orf45Q8N5I9 185 aaPredicted RBP3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 CCDC71LQ8N9Z2 235 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 Q8NFD4 153 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR11H7Q8NGC8 314 aa3.12□□□□□ -1.91
HMGB3P20-201ENST00000417997 OR13C8Q8NGS7 320 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms