RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ZDHHC8Q9ULC8 765 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BKO60814 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BJP06899 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BOP23527 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BBP33778 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BDP58876 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 STARD6P59095 220 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BCP62807 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 ID3Q02535 119 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 ELOBQ15370 118 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST2H2BEQ16778 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 ACOT6Q3I5F7 207 aaPredicted RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 LRTM2Q8N967 370 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 OR1L1Q8NH94 360 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TAF15Q92804 592 aaKnown RBP eCLIP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BHQ93079 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BNQ99877 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 HIST1H2BMQ99879 126 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 REPIN1Q9BWE0 567 aaKnown RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 KLF13Q9Y2Y9 288 aaPredicted RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 PINLYPA6NC86 204 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 B4DEV8 164 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 ACTL6BO94805 426 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM50AO95807 157 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 CYB5R3P00387 301 aaPredicted RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 MT-CO3P00414 261 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 MEF2BQ02080 365 aaPredicted RBP13.76□□□□□ -0.21
PCDH1-203ENST00000394536 ZNF90Q03938 601 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 ZNF506Q5JVG8 444 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM251Q8N6I4 163 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 OR2T10Q8NGZ9 312 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 PPP1R35Q8TAP8 253 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM56Q96MV1 263 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM56-RWDD3S4R434 201 aa13.76□□□□□ -0.21
PCDH1-203ENST00000394536 TRGV5A0A0B4J1U4 118 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 M0R1X1 148 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 FOLR2P14207 255 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 SIGLEC12Q96PQ1 595 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 AKAP6Q13023 2319 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 A8MXE2 369 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 C11orf94C9JXX5 98 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 AGFG2O95081 481 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 MBP02144 154 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 CD55P08174 381 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 ZNF600Q6ZNG1 722 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 TAAR9Q96RI9 348 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 DUXBA0A1W2PPF3 345 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 ST8SIA5O15466 376 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 DEFA4P12838 97 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 CDC34P49427 236 aaPredicted RBP13.75□□□□□ -0.21
PCDH1-203ENST00000394536 SLC25A40Q8TBP6 338 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 TTTY12Q9BZ98 90 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 PLSCR2Q9NRY7 297 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 PILRBQ9UKJ0 227 aa13.75□□□□□ -0.21
PCDH1-203ENST00000394536 LOC102723971A0A1B0GUV8 181 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 TNFSF15O95150 251 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 RPP30P78346 268 aaKnown RBP13.74□□□□□ -0.21
PCDH1-203ENST00000394536 SSMEM1Q8WWF3 244 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 FER1L6-AS2Q96M78 137 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 TUBG2Q9NRH3 451 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 SEMA5BQ9P283 1151 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 TRAPPC1Q9Y5R8 145 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 MED13LQ71F56 2210 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 A0A0G2JRQ6 117 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 AQP7O14520 342 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 TGOLN2O43493 480 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 G0S2P27469 103 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 PYY3Q5JQD4 70 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 NEIL1Q96FI4 390 aaPredicted RBP13.74□□□□□ -0.21
PCDH1-203ENST00000394536 TMEM147Q9BVK8 224 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 C1QTNF5Q9BXJ0 243 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 HAND1O96004 215 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 SERF2P84101 59 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 DRAM1Q8N682 238 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 ZDHHC11Q9H8X9 412 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 PITPNC1Q9UKF7 332 aa13.74□□□□□ -0.21
PCDH1-203ENST00000394536 SELENOVP59797 346 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 RNPS1Q15287 305 aaKnown RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 ZNF385CQ66K41 422 aaPredicted RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 GGNQ86UU5 652 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 CIB3Q96Q77 187 aaPredicted RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 ELOA3CA0A087WX78 387 aaPredicted RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 ZG16O60844 167 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 LILRA1O75019 489 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 TFF1P04155 84 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 MOB1BQ7L9L4 216 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 IL22RA2Q969J5 263 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 RYDENQ9NUL5 291 aaKnown RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 LOC102723996A0A087X1L8 192 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 F6UZH7 168 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 ETV2O00321 342 aaPredicted RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 MGST1P10620 155 aaKnown RBP13.73□□□□□ -0.21
PCDH1-203ENST00000394536 IER2Q9BTL4 223 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 DMRT1Q9Y5R6 373 aa13.73□□□□□ -0.21
PCDH1-203ENST00000394536 SCCPDHQ8NBX0 429 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 RAB24Q969Q5 203 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 UHRF2Q96PU4 802 aa13.72□□□□□ -0.21
PCDH1-203ENST00000394536 FAM103A1Q9BTL3 118 aaKnown RBP13.72□□□□□ -0.21
PCDH1-203ENST00000394536 TREM2Q9NZC2 230 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms