RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 LYG2Q86SG7 212 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 G6PC2Q9NQR9 355 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 UQCC1Q9NVA1 299 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 V9GYS6 101 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 RTTNQ86VV8 2226 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 DEDDO75618 318 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 PRSS2P07478 247 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 RD3LP0DJH9 198 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 SVBPQ8N300 66 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 DTD1Q8TEA8 209 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 CLCF1Q9UBD9 225 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 WNK3Q9BYP7 1800 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 CD24P25063 80 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 COMPP49747 757 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 C1orf122Q6ZSJ8 110 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 SFT2D1Q8WV19 159 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 ZNF696Q9H7X3 374 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 KLK11Q9UBX7 282 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 LRRC37AA6NMS7 1700 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 PINLYPA6NC86 204 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 NUDT3O95989 172 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 ZNF90Q03938 601 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 ZNF585BQ52M93 769 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 RNASEKQ6P5S7 137 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 LYPD4Q6UWN0 246 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 FAM159AQ6UWV7 190 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 PLSCR4Q9NRQ2 329 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 SCN10AQ9Y5Y9 1956 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 INAFM1C9JVW0 142 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 REG1AP05451 166 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 PTTG1IPP53801 180 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 UBE2MP61081 183 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 FAM120AOSQ5T036 256 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 C11orf42Q8N5U0 333 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 LFNGQ8NES3 379 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 NRGNQ92686 78 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 SMIM19Q96E16 107 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 CACNG5Q9UF02 275 aa7.83□□□□□ -1.16
LIMCH1-202ENST00000381753 PGA4P0DJD7 388 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 PGA3P0DJD8 388 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 MALP21145 153 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 OR13C5Q8NGS8 318 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 SEC22CQ9BRL7 303 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 SCN3AQ9NY46 2000 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 HOXA3O43365 443 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 UPK1BO75841 260 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 CEACAM4O75871 244 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 IGKV1D-16P01601 117 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 CELA3BP08861 270 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 ZFP36P26651 326 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 CDK5R1Q15078 307 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 PIGYQ3MUY2 71 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 SLC25A21Q9BQT8 299 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 TRAV41A0A0B4J266 112 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 HYPMO75409 117 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 DLX6P56179 175 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 IL13RA2Q14627 380 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 NEUROG1Q92886 237 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 ABHD14BQ96IU4 210 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 TNFRSF12AQ9NP84 129 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 SCGB1C2P0DMR2 95 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 NKX2-5P52952 324 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 WDR25Q64LD2 544 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 FAM53AQ6NSI3 398 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 ZNF329Q86UD4 541 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 ST6GALNAC6Q969X2 333 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 TMEM18Q96B42 140 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 GNPNAT1Q96EK6 184 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 NRN1Q9NPD7 142 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 NDUFB11Q9NX14 153 aa7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 FOXA2Q9Y261 457 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-202ENST00000381753 MBD3L4A6NDZ8 208 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 MBD3L3A6NE82 208 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 MBD3L5A6NJ08 208 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 IGHMP01871 453 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 TAGLN2P37802 199 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 NANOGP1Q8N7R0 232 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 MBD3L2Q8NHZ7 208 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 MRAP2Q96G30 205 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 C1QTNF4Q9BXJ3 329 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 CTDSP1Q9GZU7 261 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 PTBP3O95758 552 aaKnown RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 ZNF735P0CB33 412 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 TBCEQ15813 527 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 FAM74A4Q5TZK3 123 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 RUSC1-AS1Q66K80 236 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 TMEM182Q6ZP80 229 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 CHAC2Q8WUX2 184 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 S4R3C0 116 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 NRXN2Q9P2S2 1712 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 C9JCJ5 164 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 KLF9Q13886 244 aaPredicted RBP7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 CGB2Q6NT52 195 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 LCN15Q6UWW0 184 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 GAB2Q9UQC2 676 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 IGKV1-8A0A0C4DH67 115 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 TM4SF5O14894 197 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 ZIC3O60481 467 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 HPRT1P00492 218 aa7.81□□□□□ -1.16
LIMCH1-202ENST00000381753 YIPF5Q969M3 257 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms