RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 CDX1P47902 265 aaPredicted RBP21.3■■□□□ 1
C9orf40-201ENST00000376854 UBE2NP61088 152 aaKnown RBP21.3■■□□□ 1
C9orf40-201ENST00000376854 SLC38A11Q08AI6 406 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 SLC25A40Q8TBP6 338 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 KCNIP1Q9NZI2 227 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 HAND1O96004 215 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 S100PP25815 95 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 OR8G2PQ6IF36 304 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 TAF15Q92804 592 aaKnown RBP eCLIP21.3■■□□□ 1
C9orf40-201ENST00000376854 PINX1Q96BK5 328 aaKnown RBP21.3■■□□□ 1
C9orf40-201ENST00000376854 RBKSQ9H477 322 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 ASPMQ8IZT6 3477 aa21.3■■□□□ 1
C9orf40-201ENST00000376854 MAP1LC3B2A6NCE7 125 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 CLDN1O95832 211 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 RAC2P15153 192 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 TNFRSF9Q07011 255 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 ZNF645Q8N7E2 425 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 OR1L1Q8NH94 360 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 P2RX4Q99571 388 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 MAP1LC3BQ9GZQ8 125 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 VAX2Q9UIW0 290 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 MRGPRGQ86SM5 289 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 LOXL4Q96JB6 756 aa21.29■■□□□ 1
C9orf40-201ENST00000376854 IFITM10A6NMD0 228 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 CEBPZOSA8MTT3 80 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 PSPNO60542 156 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 RAMP3O60896 148 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 OR3A1P47881 315 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 PSG7Q13046 419 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 GALMQ96C23 342 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 GGACTQ9BVM4 153 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 OR2D2Q9H210 308 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 TMEM30CPA0ZSE6 113 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 IQCF6A8MYZ5 107 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BKO60814 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 CYB5R3P00387 301 aaPredicted RBP21.28■■□□□ 1
C9orf40-201ENST00000376854 TRGC2P03986 189 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BJP06899 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BOP23527 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BBP33778 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BDP58876 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BCP62807 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 GABRA6Q16445 453 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST2H2BEQ16778 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST2H2BFQ5QNW6 126 aaPredicted RBP21.28■■□□□ 1
C9orf40-201ENST00000376854 FIP1L1Q6UN15 594 aaKnown RBP21.28■■□□□ 1
C9orf40-201ENST00000376854 TMEM14EPQ6UXP3 125 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BHQ93079 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BNQ99877 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 HIST1H2BMQ99879 126 aa21.28■■□□□ 1
C9orf40-201ENST00000376854 IGHV1-2P23083 117 aa21.27■■□□□ 1
C9orf40-201ENST00000376854 TGFBR3Q03167 851 aa21.27■■□□□ 1
C9orf40-201ENST00000376854 ZNF766Q5HY98 468 aa21.27■■□□□ 1
C9orf40-201ENST00000376854 OR2B11Q5JQS5 317 aa21.27■■□□□ 1
C9orf40-201ENST00000376854 GMPPAQ96IJ6 420 aaPredicted RBP21.27■■□□□ 1
C9orf40-201ENST00000376854 CLDN34H7C241 214 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 LYZL6O75951 148 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 KRASP01116 189 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 IFNA1P01562 189 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 G6PCP35575 357 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 ARG2P78540 354 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 C1orf87Q8N0U7 546 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 SDF2L1Q9HCN8 221 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 TMEM242Q9NWH2 141 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 HSPB7Q9UBY9 170 aa21.27■□□□□ 0.99
C9orf40-201ENST00000376854 TMEM210A6NLX4 147 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 C12orf77C9JDV5 145 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 TMPRSS7Q7RTY8 843 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 ZNF808Q8N4W9 903 aaPredicted RBP21.26■□□□□ 0.99
C9orf40-201ENST00000376854 ZBTB34Q8NCN2 500 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 OR13D1Q8NGV5 346 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 FAM210BQ96KR6 192 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 TINAGQ9UJW2 476 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 IL2RGP31785 369 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 ZNF816Q0VGE8 651 aaPredicted RBP21.26■□□□□ 0.99
C9orf40-201ENST00000376854 FAM53AQ6NSI3 398 aaPredicted RBP21.26■□□□□ 0.99
C9orf40-201ENST00000376854 SPNS3Q6ZMD2 512 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 BEND4Q6ZU67 534 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 OR52L2PQ8NGH6 319 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 C5orf30Q96GV9 206 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 HES4Q9HCC6 221 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 OBP2BQ9NPH6 170 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 SLC39A9Q9NUM3 307 aa21.26■□□□□ 0.99
C9orf40-201ENST00000376854 ZNF737O75373 536 aa21.25■□□□□ 0.99
C9orf40-201ENST00000376854 S100A2P29034 98 aa21.25■□□□□ 0.99
C9orf40-201ENST00000376854 RND2P52198 227 aa21.25■□□□□ 0.99
C9orf40-201ENST00000376854 RPL30P62888 115 aaKnown RBP21.25■□□□□ 0.99
C9orf40-201ENST00000376854 HNF4GQ14541 408 aa21.25■□□□□ 0.99
C9orf40-201ENST00000376854 MSMO1Q15800 293 aa21.25■□□□□ 0.99
C9orf40-201ENST00000376854 CXorf67Q86X51 503 aaPredicted RBP21.25■□□□□ 0.99
C9orf40-201ENST00000376854 LHX4Q969G2 390 aa21.25■□□□□ 0.99
C9orf40-201ENST00000376854 WNT9BO14905 357 aa21.24■□□□□ 0.99
C9orf40-201ENST00000376854 MPV17P39210 176 aa21.24■□□□□ 0.99
C9orf40-201ENST00000376854 GCNT2Q8N0V5 402 aa21.24■□□□□ 0.99
C9orf40-201ENST00000376854 RPP25LQ8N5L8 163 aaKnown RBP21.24■□□□□ 0.99
C9orf40-201ENST00000376854 GAR1Q9NY12 217 aaKnown RBP21.24■□□□□ 0.99
C9orf40-201ENST00000376854 TIMM9Q9Y5J7 89 aa21.24■□□□□ 0.99
C9orf40-201ENST00000376854 PCNX2A6NKB5 2137 aa21.24■□□□□ 0.99
C9orf40-201ENST00000376854 IGKV1D-33P01593 117 aa21.24■□□□□ 0.99
C9orf40-201ENST00000376854 IGKV1-33P01594 117 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms