RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 OR2F1Q13607 317 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 COTL1Q14019 142 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ZNF56Q15929 161 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TMEM42Q69YG0 159 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 FAM71E2Q8N5Q1 922 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 C9orf106Q8NAJ2 232 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 PIFOQ8TCI5 191 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SIGLEC11Q96RL6 698 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CHIAQ9BZP6 476 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TMPRSS5Q9H3S3 457 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SDF2L1Q9HCN8 221 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TRBV5-4A0A0C4DH59 114 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TMEM238LA0A1B0GVL6 79 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 A6NJY4 79 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ZNF705EA8MWA4 302 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 OR2C1O95371 312 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TIAF1O95411 115 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGHV3-11P01762 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 PGA4P0DJD7 388 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 PGA3P0DJD8 388 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ELK1P19419 428 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CRYBB2P43320 205 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 PEA15Q15121 130 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ADIPOQQ15848 244 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 BVESQ8NE79 360 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 RAB2BQ8WUD1 216 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 MAFIPQ8WZ33 124 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 RARRES2Q99969 163 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SLC50A1Q9BRV3 221 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SYT11Q9BT88 431 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 RSG1Q9BU20 258 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TNFSF18Q9UNG2 199 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 GPR132Q9UNW8 380 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CHST2Q9Y4C5 530 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SEC16AO15027 2179 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 WDR90Q96KV7 1748 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 J3KRW8 73 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 CYB5R3P00387 301 aaPredicted RBP3.48□□□□□ -1.85
USH2A-202ENST00000366942 CECR9P0C854 216 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 LIMS3P0CW19 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 LIMS4P0CW20 117 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 NTF3P20783 257 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 SSTR5P35346 364 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 ZNF154Q13106 437 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 FOXB2Q5VYV0 432 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TMEM183AQ8IXX5 376 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 LINC00479Q96M42 142 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 FANCD2OSQ96PS1 177 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TLNRD1Q9H1K6 362 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TREX1Q9NSU2 369 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 TAS2R5Q9NYW4 299 aa3.48□□□□□ -1.85
USH2A-202ENST00000366942 IGHV3OR15-7A0A075B7D8 119 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 IGHV2OR16-5A0A0B4J2B6 119 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 A0A0G2JNJ9 132 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ANKRD20A5PA0PJZ0 165 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 RBMY1BA6NDE4 496 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 RBMY1EA6NEQ0 496 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 DEFB108AA8MXU0 73 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 RBMY1DP0C7P1 496 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 RBMY1A1P0DJD3 496 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 RBMY1CP0DJD4 496 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 RANP62826 216 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 INSL4Q14641 139 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 SLC17A1Q14916 467 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZNF791Q3KP31 576 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 GLYATL3Q5SZD4 288 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZNF525Q8N782 197 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 GPR32P1Q8NGA4 272 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 WDYHV1Q96HA8 205 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 C4orf36Q96KX1 117 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 NDUFAF3Q9BU61 184 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 IFT22Q9H7X7 185 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 SYNPO2LQ9H987 977 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PLSCR4Q9NRQ2 329 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 UQCC1Q9NVA1 299 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 Q9UFV3 132 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PXMP4Q9Y6I8 212 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 DOT1LQ8TEK3 1739 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 TRAV14DV4A0A0A6YYC5 116 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 CEACAM18A8MTB9 384 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 TGOLN2O43493 480 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 PAPLNO95428 1278 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 TGFBR1P36897 503 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 UBE2D1P51668 147 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 HNRNPFP52597 415 aaKnown RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 HOXC5Q00444 222 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 TCEAL1Q15170 157 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 TMEM183BQ1AE95 376 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 MESTQ5EB52 335 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 FDX2Q6P4F2 183 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 AKAP14Q86UN6 197 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZNF436-AS1Q8NC38 126 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 C12orf57Q99622 126 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 ZNF275Q9NSD4 429 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 FAM212BQ9NTI7 297 aaPredicted RBP3.47□□□□□ -1.85
USH2A-202ENST00000366942 OR5AC2Q9NZP5 309 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 LOC100130705A0A1B0GUX0 176 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 INAFM1C9JVW0 142 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 F8W036 122 aa3.47□□□□□ -1.85
USH2A-202ENST00000366942 HOXB5P09067 269 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms