RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MSGN1A6NI15 193 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 C19orf84I3L1E1 186 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 K7EPK0 472 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 SPDEFO95238 335 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 Q3ZCU0 254 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 NMSQ5H8A3 153 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 THOC7Q6I9Y2 204 aaKnown RBP11.08□□□□□ -0.64
HMGB1-202ENST00000339872 OR8H3Q8N146 312 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 FAM71E2Q8N5Q1 922 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 OR4D5Q8NGN0 318 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 RNASE11Q8TAA1 199 aaKnown RBP11.08□□□□□ -0.64
HMGB1-202ENST00000339872 AGMATQ9BSE5 352 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 SDHAF2Q9NX18 166 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 ABCA4P78363 2273 aa11.08□□□□□ -0.64
HMGB1-202ENST00000339872 SPTBN1Q01082 2364 aaKnown RBP11.08□□□□□ -0.64
HMGB1-202ENST00000339872 hADV38S2A0JD32 116 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF729A6NN14 1252 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 NDUFB3O43676 98 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 FCN3O75636 299 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 COL8A2P25067 703 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 ESCO2Q56NI9 601 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 OR2B11Q5JQS5 317 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 SLC51BQ86UW2 128 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 CTSZQ9UBR2 303 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 YLPM1P49750 1951 aaKnown RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 CACNA1BQ00975 2339 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 PIGBOS1A0A0B4J2F0 54 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 TNFRSF13BO14836 293 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 IGKV1-39P01597 117 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 IGKV1D-39P04432 117 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 SOD3P08294 240 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 EPHA1P21709 976 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 NFYBP25208 207 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 GPR12P47775 334 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 RPL30P62888 115 aaKnown RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 RPL31P62899 125 aaKnown RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 CATR1Q13166 79 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 EIF4EBP1Q13541 118 aaPredicted RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 MSMO1Q15800 293 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF585BQ52M93 769 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 LRRC10Q5BKY1 277 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 TCTEX1D2Q8WW35 142 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 H1FXQ92522 213 aaKnown RBP11.07□□□□□ -0.64
HMGB1-202ENST00000339872 LEAP2Q969E1 77 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 AQP10Q96PS8 301 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 ARPC5LQ9BPX5 153 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 RAB1BQ9H0U4 201 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 C19orf12Q9NSK7 152 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 GFOD1Q9NXC2 390 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 LINC00312Q9Y6C7 94 aa11.07□□□□□ -0.64
HMGB1-202ENST00000339872 A0A0G2JRQ6 117 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ST8SIA3O43173 380 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 AKR1C2P52895 323 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF273Q14593 569 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 UTF1Q5T230 341 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 C11orf71Q6IPW1 123 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 CORO2AQ92828 525 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF471Q9BX82 626 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ZFP57Q9NU63 452 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 IDI2-AS1Q9NZ38 188 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 DVL1O14640 695 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 CLDN1O95832 211 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 NKX2-1P43699 371 aaPredicted RBP11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF134P52741 427 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 UBA52P62987 128 aaKnown RBP11.06□□□□□ -0.64
HMGB1-202ENST00000339872 PRAMEF5Q5TYX0 476 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ALKAL2Q6UX46 152 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ABHD14AQ9BUJ0 271 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 ZC4H2Q9NQZ6 224 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 POMT1Q9Y6A1 747 aa11.06□□□□□ -0.64
HMGB1-202ENST00000339872 A0A1W2PPR1 153 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 CLEC18AA5D8T8 446 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 B8ZZF3 427 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 F5H0A9 414 aaPredicted RBP11.05□□□□□ -0.64
HMGB1-202ENST00000339872 SLC31A2O15432 143 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 RAMP3O60896 148 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 NXPH3O95157 252 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 PRB1P04280 392 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 LPAR6P43657 344 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 MEF2CQ06413 473 aaPredicted RBP11.05□□□□□ -0.64
HMGB1-202ENST00000339872 CLEC18CQ8NCF0 446 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 FAM216AQ8WUB2 273 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 ST8SIA2Q92186 375 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 HSD17B10Q99714 261 aaKnown RBP11.05□□□□□ -0.64
HMGB1-202ENST00000339872 IFI27L2Q9H2X8 130 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 KAAG1Q9UBP8 84 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 RALYQ9UKM9 306 aaKnown RBP11.05□□□□□ -0.64
HMGB1-202ENST00000339872 ITGB1BP2Q9UKP3 347 aa11.05□□□□□ -0.64
HMGB1-202ENST00000339872 RCL1Q9Y2P8 373 aaKnown RBP11.05□□□□□ -0.64
HMGB1-202ENST00000339872 HRNRQ86YZ3 2850 aaPredicted RBP11.05□□□□□ -0.64
HMGB1-202ENST00000339872 A0A1W2PPE3 182 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 E5RGE8 158 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 NDUFA2O43678 99 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 MMP23AO75900 390 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 LY6HO94772 140 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 HKR1P10072 659 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 RPL12P30050 165 aaKnown RBP11.04□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF816Q0VGE8 651 aaPredicted RBP11.04□□□□□ -0.64
HMGB1-202ENST00000339872 IZUMO4Q1ZYL8 232 aa11.04□□□□□ -0.64
HMGB1-202ENST00000339872 ZNF66Q6ZN08 573 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms