RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 P2RX4Q99571 388 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 ABHD14AQ9BUJ0 271 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 LPAR5Q9H1C0 372 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 ZFP57Q9NU63 452 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 TPRKBQ9Y3C4 175 aa8.5□□□□□ -1.05
VPS39-208ENST00000564994 WI2-2373I1.2A0A1W2PRP0 233 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 NUDT19A8MXV4 375 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 SOCS1O15524 211 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 DUS4LO95620 317 aaKnown RBP8.49□□□□□ -1.05
VPS39-208ENST00000564994 BPNT1O95861 308 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 NAPSAO96009 420 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 HSMCR30P0CW71 290 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 CNTFRP26992 372 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 BLVRBP30043 206 aaPredicted RBP8.49□□□□□ -1.05
VPS39-208ENST00000564994 OR3A3P47888 321 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 EGFEM1PQ0D2K5 195 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 TPBGQ13641 420 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 PNLIPRP3Q17RR3 467 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 LY6G6FQ5SQ64 297 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 ZNF880Q6PDB4 577 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 TEX38Q6PEX7 206 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 ZNF833PQ6ZTB9 187 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 SVOPQ8N4V2 548 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 OR51D1Q8NGF3 324 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 OR6M1Q8NGM8 313 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 KCNG3Q8TAE7 436 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 RASL11BQ9BPW5 248 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 NABP2Q9BQ15 211 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 MRPL20Q9BYC9 149 aaKnown RBP8.49□□□□□ -1.05
VPS39-208ENST00000564994 ANKRD60Q9BZ19 345 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 IFI27L2Q9H2X8 130 aa8.49□□□□□ -1.05
VPS39-208ENST00000564994 AK6Q9Y3D8 172 aaKnown RBP8.49□□□□□ -1.05
VPS39-208ENST00000564994 SAA2-SAA4A0A096LPE2 208 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 FOXI3A8MTJ6 420 aaPredicted RBP8.48□□□□□ -1.05
VPS39-208ENST00000564994 RGS10O43665 173 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 SAA2P0DJI9 122 aaPredicted RBP8.48□□□□□ -1.05
VPS39-208ENST00000564994 SLC2A2P11168 524 aaPredicted RBP8.48□□□□□ -1.05
VPS39-208ENST00000564994 CPEP16870 476 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 CRHBPP24387 322 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 SLC6A1P30531 599 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 SOX6P35712 828 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 MYCNOSP40205 109 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 MAP2K4P45985 399 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 FABP5Q01469 135 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 MLLT11Q13015 90 aaPredicted RBP8.48□□□□□ -1.05
VPS39-208ENST00000564994 P2RY14Q15391 338 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 ZNF695Q8IW36 515 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 FAM89BQ8N5H3 189 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 RNF152Q8N8N0 203 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 IL1F10Q8WWZ1 152 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 GALMQ96C23 342 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 RAX2Q96IS3 184 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 ZNF251Q9BRH9 671 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 HDHD3Q9BSH5 251 aaPredicted RBP8.48□□□□□ -1.05
VPS39-208ENST00000564994 PARP12Q9H0J9 701 aaKnown RBP8.48□□□□□ -1.05
VPS39-208ENST00000564994 ISYNA1Q9NPH2 558 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 AK3Q9UIJ7 227 aa8.48□□□□□ -1.05
VPS39-208ENST00000564994 TRBV6-6A0A0A6YYG2 114 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 SLC17A2O00624 439 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 ST8SIA5O15466 376 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 RGS11O94810 467 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 IGHG4P01861 327 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 IGF1P05019 195 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 TMEM50BP56557 158 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 CLDN12P56749 244 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 ACTBP60709 375 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 FOXE3Q13461 319 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 MMDQ15546 238 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 DEFB136Q30KP8 78 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 PRSS48Q7RTY5 328 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 OR2AK2Q8NG84 335 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 SETD6Q8TBK2 473 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 KCTD7Q96MP8 289 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 MGLLQ99685 303 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 GON7Q9BXV9 100 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 CCDC90BQ9GZT6 254 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 PLGRKTQ9HBL7 147 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 CHMP1AQ9HD42 196 aaPredicted RBP8.47□□□□□ -1.05
VPS39-208ENST00000564994 PLEKHJ1Q9NW61 149 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 ABRACLQ9P1F3 81 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 ZNF107Q9UII5 783 aaPredicted RBP8.47□□□□□ -1.05
VPS39-208ENST00000564994 LRRC42Q9Y546 428 aa8.47□□□□□ -1.05
VPS39-208ENST00000564994 IGHV7-81A0A0B4J1V7 117 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 CCL24O00175 119 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 RRP9O43818 475 aaKnown RBP8.46□□□□□ -1.06
VPS39-208ENST00000564994 ARL6IP5O75915 188 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 ELANEP08246 267 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 ARSBP15848 533 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 CALRP27797 417 aaKnown RBP8.46□□□□□ -1.06
VPS39-208ENST00000564994 PSMB8P28062 276 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 PPIFP30405 207 aaKnown RBP8.46□□□□□ -1.06
VPS39-208ENST00000564994 CDX1P47902 265 aaPredicted RBP8.46□□□□□ -1.06
VPS39-208ENST00000564994 PLA2G7Q13093 441 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 TRAM1Q15629 374 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 RPL39P5Q59GN2 51 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 CXorf66Q5JRM2 361 aaPredicted RBP8.46□□□□□ -1.06
VPS39-208ENST00000564994 ARHGAP5-AS1Q96IT6 56 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 ABHD14BQ96IU4 210 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 AGMATQ9BSE5 352 aa8.46□□□□□ -1.06
VPS39-208ENST00000564994 URM1Q9BTM9 101 aaKnown RBP8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms