RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 YPEL2Q96QA6 119 aa13.15□□□□□ -0.3
CPSF1-207ENST00000531727 NABP2Q9BQ15 211 aa13.15□□□□□ -0.3
CPSF1-207ENST00000531727 SULT4A1Q9BR01 284 aa13.15□□□□□ -0.3
CPSF1-207ENST00000531727 CHCHD6Q9BRQ6 235 aa13.15□□□□□ -0.3
CPSF1-207ENST00000531727 MRPL20Q9BYC9 149 aaKnown RBP13.15□□□□□ -0.3
CPSF1-207ENST00000531727 LRRC42Q9Y546 428 aa13.15□□□□□ -0.3
CPSF1-207ENST00000531727 CASQ2O14958 399 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-207ENST00000531727 VSIG8P0DPA2 414 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 LUMP51884 338 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-207ENST00000531727 ACTBP60709 375 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 C1orf100Q5SVJ3 147 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 FAM27D1Q5T7N8 215 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 ZNF833PQ6ZTB9 187 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 LRRTM1Q86UE6 522 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 MS4A15Q8N5U1 240 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 MYOZ3Q8TDC0 251 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 PHYHIPQ92561 330 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 ZNF251Q9BRH9 671 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 FAAP24Q9BTP7 215 aa13.14□□□□□ -0.31
CPSF1-207ENST00000531727 HLA-DRB1P01911 266 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 CDK1P06493 297 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 CNTFRP26992 372 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 PPIFP30405 207 aaKnown RBP13.13□□□□□ -0.31
CPSF1-207ENST00000531727 RPS27AP62979 156 aaKnown RBP13.13□□□□□ -0.31
CPSF1-207ENST00000531727 GABPB1Q06547 395 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-207ENST00000531727 FHL3Q13643 280 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 HMGN3Q15651 99 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 RBM48Q5RL73 367 aaKnown RBP13.13□□□□□ -0.31
CPSF1-207ENST00000531727 RNLSQ5VYX0 342 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 GLT8D1Q68CQ7 371 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 OR10K2Q6IF99 312 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 C6orf201Q7Z4U5 140 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 OR2AK2Q8NG84 335 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 RITA1Q96K30 269 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 TMED9Q9BVK6 235 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 MND1Q9BWT6 205 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 TMEM59Q9BXS4 323 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.13□□□□□ -0.31
CPSF1-207ENST00000531727 ABRACLQ9P1F3 81 aa13.13□□□□□ -0.31
CPSF1-207ENST00000531727 SAA2-SAA4A0A096LPE2 208 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 ATP6V0E1O15342 81 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 NBR2O15453 112 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 SAA2P0DJI9 122 aaPredicted RBP13.12□□□□□ -0.31
CPSF1-207ENST00000531727 HTR2CP28335 458 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 OR3A3P47888 321 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 FAM71F2Q6NXP2 309 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 TMEM65Q6PI78 240 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 SVOPQ8N4V2 548 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 KCNG3Q8TAE7 436 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 UBE2E2Q96LR5 201 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 TM2D1Q9BX74 207 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 IFI27L2Q9H2X8 130 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 OR51J1Q9H342 316 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 PARP11Q9NR21 331 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 WSB1Q9Y6I7 421 aa13.12□□□□□ -0.31
CPSF1-207ENST00000531727 IGHV7-81A0A0B4J1V7 117 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 SEC14L6B5MCN3 397 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 G3V318 75 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 IGLV1-40P01703 118 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 UNC119Q13432 240 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 KIAA0141Q14154 515 aaPredicted RBP13.11□□□□□ -0.31
CPSF1-207ENST00000531727 C5orf64Q2M2E5 130 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 ZNF880Q6PDB4 577 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 ZNF491Q8N8L2 437 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 NPBQ8NG41 125 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 OR11H1Q8NG94 326 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 IL1F10Q8WWZ1 152 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 NICN1Q9BSH3 213 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 ANKRD60Q9BZ19 345 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 KLK15Q9H2R5 256 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 VCXQ9H320 206 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 KCNK15Q9H427 330 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 STEAP1Q9UHE8 339 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 SCOCQ9UIL1 159 aa13.11□□□□□ -0.31
CPSF1-207ENST00000531727 LSM2Q9Y333 95 aaKnown RBP13.11□□□□□ -0.31
CPSF1-207ENST00000531727 TRAV41A0A0B4J266 112 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 TMEM14DPA8MWL7 114 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 PTGES3LE9PB15 166 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 I3L521 148 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 SLC22A1O15245 554 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 NDUFA3O95167 84 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 NAPSAO96009 420 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 CD37P11049 281 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 SRMP19623 302 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 BLVRBP30043 206 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-207ENST00000531727 QRFPP83859 136 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 RUNX1Q01196 453 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 SPHARQ15513 63 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 HSD17B12Q53GQ0 312 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 LIN54Q6MZP7 749 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 MOB1BQ7L9L4 216 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 CEACAM19Q7Z692 300 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 WWC2-AS2Q96NR7 200 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 GNB4Q9HAV0 340 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 CHMP1AQ9HD42 196 aaPredicted RBP13.1□□□□□ -0.31
CPSF1-207ENST00000531727 PIPOXQ9P0Z9 390 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 KIAA1456Q9P272 454 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 VSIG4Q9Y279 399 aa13.1□□□□□ -0.31
CPSF1-207ENST00000531727 LSM4Q9Y4Z0 139 aaKnown RBP13.1□□□□□ -0.31
CPSF1-207ENST00000531727 RAB29O14966 203 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms