RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PLEKHF2Q9H8W4 249 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 Q9N2K0 584 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RNF150Q9ULK6 438 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MAP1LC3B2A6NCE7 125 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HSD17B6O14756 317 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 EREGO14944 169 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 IGHV2-5P01817 119 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HIST1H1DP16402 221 aaKnown RBP9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GLIPR1P48060 266 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RAB7AP51149 207 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF83P51522 516 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 LSM6P62312 80 aaKnown RBP9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM208Q9BTX3 173 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MAP1LC3BQ9GZQ8 125 aa9.3□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 DHRS3O75911 302 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ATP6V0CP27449 155 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CHRNB4P30926 498 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PPP1CBP62140 327 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NANOS1Q8WY41 292 aaKnown RBP9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GFI1Q99684 422 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GPR35Q9HC97 309 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ASCL3Q9NQ33 180 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TRAPPC2LQ9UL33 140 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 J3QRE1 110 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NTN3O00634 580 aaPredicted RBP9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TK1P04183 234 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FCGR3AP08637 254 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 DANCRP0C864 163 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 EDDM3BP56851 147 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RPS16P62249 146 aaKnown RBP9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NUFIP2Q7Z417 695 aaKnown RBP9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BMPERQ8N8U9 685 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF738Q8NE65 137 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OIT3Q8WWZ8 545 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NTNG2Q96CW9 530 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 G6PC2Q9NQR9 355 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM100Q9NV29 134 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HMGB3O15347 200 aaKnown RBP9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PMCHP20382 165 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CDPF1Q6NVV7 123 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SLC35E3Q7Z769 313 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FGFBP3Q8TAT2 258 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ATP5SQ99766 215 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 RNF126Q9BV68 326 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CTDSP1Q9GZU7 261 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CHRNA10Q9GZZ6 450 aa9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MYOZ1Q9NP98 299 aaPredicted RBP9.29□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 WDFY3Q8IZQ1 3526 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 H0YIZ8 118 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 M0R1B8 84 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 WDR1O75083 606 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CYB5R3P00387 301 aaPredicted RBP9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FAM78BQ5VT40 261 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CISD2Q8N5K1 135 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF816-ZNF321PA0A0X1KG74 233 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 K7ERU9 68 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CDC14BO60729 498 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ACP1P24666 158 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 EIF3IQ13347 325 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 IL13RA2Q14627 380 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ANKRD55Q3KP44 614 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR8G2PQ6IF36 304 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF808Q8N4W9 903 aaPredicted RBP9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 BEND2Q8NDZ0 799 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 OR10S1Q8NGN2 331 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FGF11Q92914 225 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 STARD4Q96DR4 205 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 SH3BGRL3Q9H299 93 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 STARD10Q9Y365 291 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 CNN1P51911 297 aaKnown RBP9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 C1QL4Q86Z23 238 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 WFDC8Q8IUA0 241 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 ZNF664Q8N3J9 261 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TCTEX1D1Q8N7M0 179 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TPRX1Q8N7U7 411 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 NINJ1Q92982 152 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 TMEM38BQ9NVV0 291 aa9.28□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 C9JQL5 133 aa9.27□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 HPRT1P00492 218 aa9.27□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 MGST1P10620 155 aaKnown RBP9.27□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 PTGDSP41222 190 aa9.27□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 FAM206AQ9NX38 181 aa9.27□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 GPR132Q9UNW8 380 aa9.27□□□□□ -0.92
MSH5-SAPCD1-207ENST00000493662 KIAA1549LQ6ZVL6 1849 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TRBV5-5A0A0J9YX44 114 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TNFSF10P50591 281 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ATP6V1FQ16864 119 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PRR27Q6MZM9 219 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 HOGA1Q86XE5 327 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 ERGIC1Q969X5 290 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 MUCL1Q96DR8 90 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PCGF1Q9BSM1 259 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 EML6Q6ZMW3 1958 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 PIGBOS1A0A0B4J2F0 54 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 LRP5LA4QPB2 252 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 CXCL1P09341 107 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 FAM157CP0CG43 387 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 TFPI2P48307 235 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 C5orf24Q7Z6I8 188 aa9.27□□□□□ -0.93
MSH5-SAPCD1-207ENST00000493662 OR2H1Q9GZK4 316 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms