RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 FBXO5Q9UKT4 447 aa2.43□□□□□ -2.02
VPS13A-210ENST00000471439 CES1P1Q9UKY3 287 aa2.43□□□□□ -2.02
VPS13A-210ENST00000471439 WSB1Q9Y6I7 421 aa2.43□□□□□ -2.02
VPS13A-210ENST00000471439 MUC17Q685J3 4493 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 TRBV6-6A0A0A6YYG2 114 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 PCP4L1A6NKN8 68 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 C12orf71A8MTZ7 269 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 EIF1BO60739 113 aaKnown RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 OR2F2O95006 317 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 UBL3O95164 117 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 TMEM50AO95807 157 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 KRTAP2-3P0C7H8 128 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 CRISP2P16562 243 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 CSNK2A2P19784 350 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 HLA-DMBP28068 263 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 RAP1GDS1P52306 607 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 ELF3P78545 371 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 RUNX1Q01196 453 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 MERTKQ12866 999 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 MADCAM1Q13477 382 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 PRPSAP1Q14558 356 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 KCNJ8Q15842 424 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 HADHQ16836 314 aaKnown RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 KCTD19Q17RG1 926 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 RSPO1Q2MKA7 263 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 HSP90AA4PQ58FG1 418 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 Q6P435 159 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 CNIH2Q6PI25 160 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 PUSL1Q8N0Z8 303 aaKnown RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 NECAP1Q8NC96 275 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 OR10AD1Q8NGE0 317 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 OR52L1Q8NGH7 329 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 ZNF675Q8TD23 568 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 CD200R1Q8TD46 325 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 SRSF12Q8WXF0 261 aaKnown RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 MALSU1Q96EH3 234 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 HDHD3Q9BSH5 251 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 KRTAP2-4Q9BYR9 128 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 C11orf68Q9H3H3 251 aaKnown RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 NIPAL2Q9H841 368 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 TAS2R9Q9NYW1 312 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 SLC25A37Q9NYZ2 338 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 PACSIN2Q9UNF0 486 aaPredicted RBP2.42□□□□□ -2.02
VPS13A-210ENST00000471439 HDGFL3Q9Y3E1 203 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 PEX16Q9Y5Y5 336 aa2.42□□□□□ -2.02
VPS13A-210ENST00000471439 A0A1W2PQD3 144 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 LINC01619G3V211 115 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 GOSR2O14653 212 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 NDUFA2O43678 99 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 KRTAP5-8O75690 187 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 SEMA3DO95025 777 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 GKN3PP0CG01 181 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 HPGDP15428 266 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 NCF2P19878 526 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-210ENST00000471439 CCNOP22674 350 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 CMA1P23946 247 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 AP1S2P56377 157 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 ACTBP60709 375 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 SLC35A1P78382 337 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 GNMTQ14749 295 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 OR8B8Q15620 311 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 GUCA2BQ16661 112 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 C18orf21Q32NC0 220 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-210ENST00000471439 CLEC12AQ5QGZ9 265 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 SLC48A1Q6P1K1 146 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 KATNAL2Q8IYT4 538 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 OTUD6BQ8N6M0 293 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 OR4F6Q8NGB9 312 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 OR4M1Q8NGD0 313 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 OR51G1Q8NGK1 321 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 OR9A2Q8NGT5 310 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 H1FXQ92522 213 aaKnown RBP2.41□□□□□ -2.02
VPS13A-210ENST00000471439 ZNF681Q96N22 645 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 SORT1Q99523 831 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 ECSITQ9BQ95 431 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 TMEM59Q9BXS4 323 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 SLC25A39Q9BZJ4 359 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-210ENST00000471439 DNTTIP1Q9H147 329 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 CTPS2Q9NRF8 586 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 SLC2A8Q9NY64 477 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 HYOU1Q9Y4L1 999 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 HILPDAQ9Y5L2 63 aa2.41□□□□□ -2.02
VPS13A-210ENST00000471439 F11RQ9Y624 299 aaKnown RBP2.41□□□□□ -2.02
VPS13A-210ENST00000471439 DEFB131BA0A096LNP1 70 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 F5H5P2 479 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 M0R3G1 203 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SUPT3HO75486 399 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 CA11O75493 328 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 FGFR1OPO95684 399 aaKnown RBP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 IGLV2-23P01705 113 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 KITLGP21583 273 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SLC2A5P22732 501 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 GABRA3P34903 492 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 VHLP40337 213 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 YAP1P46937 504 aaKnown RBP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 SRP9P49458 86 aaKnown RBP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 NCBP2P52298 156 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS13A-210ENST00000471439 PLP1P60201 277 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 ACTR3P61158 418 aa2.4□□□□□ -2.03
VPS13A-210ENST00000471439 PPP1CBP62140 327 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms