RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 KCNS2Q9ULS6 477 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 SESN1Q9Y6P5 492 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 ZFHX3Q15911 3703 aa11.7□□□□□ -0.54
SKA1-202ENST00000398452 TRAV6A0A075B6T7 132 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 IGKV1-6A0A0C4DH72 117 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 B4DSR2 109 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 C22orf46C9J442 243 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 INMT-MINDY4F8WBC2 141 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 TOR1AO14656 332 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 SLC22A5O76082 557 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 CGB3P0DN86 165 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 CGB7P0DN87 165 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 PPP1CCP36873 323 aaKnown RBP11.69□□□□□ -0.54
SKA1-202ENST00000398452 TAS2R31P59538 309 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 LOXL1Q08397 574 aaPredicted RBP11.69□□□□□ -0.54
SKA1-202ENST00000398452 PLA1AQ53H76 456 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 TCF23Q7RTU1 214 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 TMED4Q7Z7H5 227 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 CMTM1Q8IZ96 169 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 SLC38A6Q8IZM9 456 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 CCDC71LQ8N9Z2 235 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 LY6G5BQ8NDX9 201 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 MARCH1Q8TCQ1 289 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 MOB3AQ96BX8 217 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 REG4Q9BYZ8 158 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 SLC5A7Q9GZV3 580 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 MMP28Q9H239 520 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 ZFAND3Q9H8U3 227 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 LPAR2Q9HBW0 351 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 ZNF221Q9UK13 617 aa11.69□□□□□ -0.54
SKA1-202ENST00000398452 IGHV2-70DA0A0C4DH43 119 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 OR5H14A6NHG9 310 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 C17orf98A8MV24 154 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 ARPC1BO15143 372 aaKnown RBP11.68□□□□□ -0.54
SKA1-202ENST00000398452 FCN3O75636 299 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 OR8U9P0C7N5 309 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 IGHV1-8P0DP01 117 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 BTCP35070 178 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 UCP3P55916 312 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 ARF6P62330 175 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 Q3ZCU0 254 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 MORN2Q502X0 79 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 Q71RC1 249 aaPredicted RBP11.68□□□□□ -0.54
SKA1-202ENST00000398452 C5orf24Q7Z6I8 188 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 LHFPL1Q86WI0 220 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 KIR3DL3Q8N743 410 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 OR13D1Q8NGV5 346 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 OR8U1Q8NH10 309 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 SUCNR1Q9BXA5 334 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 GHITMQ9H3K2 345 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 METTL8Q9H825 291 aaKnown RBP11.68□□□□□ -0.54
SKA1-202ENST00000398452 HEXA-AS1Q9H8Q6 139 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 LINC00574Q9H8X3 128 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 GPN1Q9HCN4 374 aaPredicted RBP11.68□□□□□ -0.54
SKA1-202ENST00000398452 KPTNQ9Y664 436 aa11.68□□□□□ -0.54
SKA1-202ENST00000398452 FLNAP21333 2647 aaKnown RBP11.67□□□□□ -0.54
SKA1-202ENST00000398452 KIAA1324LA8MWY0 1029 aaPredicted RBP11.67□□□□□ -0.54
SKA1-202ENST00000398452 FAM157AC9JC47 383 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 TUSC2O75896 110 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 MSMBP08118 114 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 ZFP36P26651 326 aaKnown RBP11.67□□□□□ -0.54
SKA1-202ENST00000398452 IL3RAP26951 378 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 GPR12P47775 334 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 GZMKP49863 264 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 GNG10P50151 68 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 DVL1P1P54792 670 aaPredicted RBP11.67□□□□□ -0.54
SKA1-202ENST00000398452 PRRX1P54821 245 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 C1orf122Q6ZSJ8 110 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 GLCCI1Q86VQ1 547 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 LINC01356Q8N9X3 169 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 WFDC11Q8NEX6 87 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 OR13C8Q8NGS7 320 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 ZNF486Q96H40 463 aaPredicted RBP11.67□□□□□ -0.54
SKA1-202ENST00000398452 AKR1E2Q96JD6 320 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 ABHD14AQ9BUJ0 271 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 TOLLIPQ9H0E2 274 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 PSG11Q9UQ72 335 aa11.67□□□□□ -0.54
SKA1-202ENST00000398452 TRAV20A0A0B4J274 112 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 GPR31O00270 319 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 ITGB1BP1O14713 200 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 HSD17B6O14756 317 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 PRAF2O60831 178 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 PEX14O75381 377 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 CTSDP07339 412 aaPredicted RBP11.66□□□□□ -0.54
SKA1-202ENST00000398452 GATA3P23771 443 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 RAG2P55895 527 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 RAB25P57735 213 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 LOXL3P58215 753 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 BAMBIQ13145 260 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 GNMTQ14749 295 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 C4orf46Q504U0 113 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 LY6G6FQ5SQ64 297 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 AADACL3Q5VUY0 350 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 DCAF12L2Q5VW00 463 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 ZNF660Q6AZW8 331 aaPredicted RBP11.66□□□□□ -0.54
SKA1-202ENST00000398452 ZBTB34Q8NCN2 500 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 OR10X1Q8NGY0 326 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 OR9G1Q8NH87 305 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 SMR3AQ99954 134 aa11.66□□□□□ -0.54
SKA1-202ENST00000398452 MARVELD1Q9BSK0 173 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms