RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 OOEPA6NGQ2 149 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 HRKO00198 91 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 HBZP02008 142 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 PRSS1P07477 247 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 TEPPQ6URK8 271 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 TAF15Q92804 592 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHANK1-203ENST00000391813 KBTBD11O94819 623 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 NDUFB4O95168 129 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 CCL4P13236 92 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 LTBRP36941 435 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 WIPI1Q5MNZ9 446 aaPredicted RBP17.12■□□□□ 0.33
SHANK1-203ENST00000391813 SSMEM1Q8WWF3 244 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 NGFRP08138 427 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 PMELP40967 661 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 TIMD4Q96H15 378 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 WDR54Q9H977 334 aa17.12■□□□□ 0.33
SHANK1-203ENST00000391813 IGLV1-36A0A0B4J1U3 117 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 OR5A2Q8NGI9 324 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 NDUFAF3Q9BU61 184 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 OR6C3Q9NZP0 311 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 GFRA3O60609 400 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 MFAP2P55001 183 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 MESP2Q0VG99 397 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 WDR25Q64LD2 544 aaPredicted RBP17.11■□□□□ 0.33
SHANK1-203ENST00000391813 HEXA-AS1Q9H8Q6 139 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 IL36GQ9NZH8 169 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 J3QT63 122 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 OR2J3O76001 311 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 LCN2P80188 198 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 ZNF124Q15973 351 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 LRRC75AQ8NAA5 344 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 VSTM2AQ8TAG5 236 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 BLNKQ8WV28 456 aa17.11■□□□□ 0.33
SHANK1-203ENST00000391813 DEFB108AA8MXU0 73 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 COL8A1P27658 744 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 CD1BP29016 333 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 MRGPRDQ8TDS7 321 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 TMEM38BQ9NVV0 291 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A26D6RGX4 464 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 IGKV1D-16P01601 117 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 FGF11Q92914 225 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 TRAV14DV4A0A0A6YYC5 116 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 TMEM14DPA8MWL7 114 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 RNF224P0DH78 156 aa17.1■□□□□ 0.33
SHANK1-203ENST00000391813 TRBV9A0A0B4J1U6 114 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 A0A1W2PP11 408 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 HERPUD1Q15011 391 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 CXorf66Q5JRM2 361 aaPredicted RBP17.09■□□□□ 0.33
SHANK1-203ENST00000391813 TMEM52Q8NDY8 209 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 PLPPR2Q96GM1 343 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 MARS2Q96GW9 593 aaKnown RBP17.09■□□□□ 0.33
SHANK1-203ENST00000391813 PLA2G3Q9NZ20 509 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 DNPH1O43598 174 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 VENTXO95231 258 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 C2orf68Q2NKX9 166 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 OR10D3Q8NH80 312 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 ZFP30Q9Y2G7 519 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 ZNF236Q9UL36 1845 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A10PA6NDY2 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A18PA6NE21 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A16PA6NEW6 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A20PA6NIJ5 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A8PA6NJQ4 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A7PA6NKC0 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A22PA8MWA6 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A12PA8MX19 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A5PA8MXJ8 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A23PA8MXZ1 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A15PP0C7V4 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A13PP0C7W8 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A14PP0C7W9 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FAM90A24PP0C7X0 464 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 PATE4P0C8F1 98 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 SLC23A3Q6PIS1 610 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 MRPL18Q9H0U6 180 aaKnown RBP17.09■□□□□ 0.33
SHANK1-203ENST00000391813 APC2O95996 2303 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 MSGN1A6NI15 193 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FTH1P19P0C7X4 201 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 FHITP49789 147 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 UCP3P55916 312 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 PPP1CAP62136 330 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 TGIF1Q15583 401 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 ZXDCQ2QGD7 858 aaPredicted RBP17.09■□□□□ 0.33
SHANK1-203ENST00000391813 PSMG3Q9BT73 122 aaPredicted RBP17.09■□□□□ 0.33
SHANK1-203ENST00000391813 SH3BGRL3Q9H299 93 aa17.09■□□□□ 0.33
SHANK1-203ENST00000391813 A0A1W2PR80 420 aa17.08■□□□□ 0.33
SHANK1-203ENST00000391813 GZMHP20718 246 aa17.08■□□□□ 0.33
SHANK1-203ENST00000391813 NPY1RP25929 384 aa17.08■□□□□ 0.33
SHANK1-203ENST00000391813 MEOX1P50221 254 aa17.08■□□□□ 0.33
SHANK1-203ENST00000391813 VASH2Q86V25 355 aa17.08■□□□□ 0.33
SHANK1-203ENST00000391813 TGIF2LYQ8IUE0 185 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 OR1K1Q8NGR3 316 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 AHCTF1Q8WYP5 2266 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 A0A1B0GTI1 187 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 FGF16O43320 207 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 MELTFP08582 738 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 GABRA6Q16445 453 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 SLC25A34Q6PIV7 304 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 ZDHHC8Q9ULC8 765 aa17.08■□□□□ 0.32
SHANK1-203ENST00000391813 DTX4Q9Y2E6 619 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms