RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 SPANXN5Q5MJ07 72 aa18.62■□□□□ 0.57
SHMT1-201ENST00000316694 Q6P435 159 aa18.62■□□□□ 0.57
SHMT1-201ENST00000316694 HAPLN4Q86UW8 402 aa18.62■□□□□ 0.57
SHMT1-201ENST00000316694 OR10G4Q8NGN3 311 aa18.62■□□□□ 0.57
SHMT1-201ENST00000316694 CISD1Q9NZ45 108 aaKnown RBP18.62■□□□□ 0.57
SHMT1-201ENST00000316694 MT-CO3P00414 261 aa18.62■□□□□ 0.57
SHMT1-201ENST00000316694 ELLP55199 621 aaPredicted RBP18.62■□□□□ 0.57
SHMT1-201ENST00000316694 RCC1LQ96I51 464 aaKnown RBP18.62■□□□□ 0.57
SHMT1-201ENST00000316694 PKIBQ9C010 78 aa18.62■□□□□ 0.57
SHMT1-201ENST00000316694 GAR1Q9NY12 217 aaKnown RBP18.62■□□□□ 0.57
SHMT1-201ENST00000316694 MED13Q9UHV7 2174 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 NCOR1O75376 2440 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 HBG1P69891 147 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 HBG2P69892 147 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 HNF4GQ14541 408 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 PDZD11Q5EBL8 140 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 OR14J1Q9UGF5 321 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 KMT2EQ8IZD2 1858 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 ARHGAP21Q5T5U3 1957 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 TECTAO75443 2155 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 LRP5LA4QPB2 252 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-201ENST00000316694 J3QT63 122 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 ZNF585BQ52M93 769 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 PYY3Q5JQD4 70 aa18.61■□□□□ 0.57
SHMT1-201ENST00000316694 B4DEV8 164 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 C9orf172C9J069 976 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 OR2H2O95918 312 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 LIN7CQ9NUP9 197 aaKnown RBP18.6■□□□□ 0.57
SHMT1-201ENST00000316694 CEBPZOSA8MTT3 80 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 MDH2P40926 338 aaKnown RBP18.6■□□□□ 0.57
SHMT1-201ENST00000316694 MDP1Q86V88 176 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 FAM210BQ96KR6 192 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 TMEM9BQ9NQ34 198 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 FOXJ2Q9P0K8 574 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 ABI3Q9P2A4 366 aa18.6■□□□□ 0.57
SHMT1-201ENST00000316694 NPIPB11E5RHQ5 1161 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 CEACAM6P40199 344 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 NKX6-1P78426 367 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-201ENST00000316694 LRRC75BQ2VPJ9 315 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 GFI1BQ5VTD9 330 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 PSMG3Q9BT73 122 aaPredicted RBP18.59■□□□□ 0.57
SHMT1-201ENST00000316694 RNF150Q9ULK6 438 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 IL18BPO95998 194 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 OR8G2PQ6IF36 304 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 ZNF497Q6ZNH5 498 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 WDR86Q86TI4 376 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 C1orf87Q8N0U7 546 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 MBD3L1Q8WWY6 194 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 OR4C12Q96R67 309 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 STRADBQ9C0K7 418 aa18.59■□□□□ 0.57
SHMT1-201ENST00000316694 UBE2L5PA0A1B0GUS4 154 aa18.58■□□□□ 0.57
SHMT1-201ENST00000316694 MOB1BQ7L9L4 216 aa18.58■□□□□ 0.57
SHMT1-201ENST00000316694 CA5BP1Q8WTZ4 195 aa18.58■□□□□ 0.57
SHMT1-201ENST00000316694 RTL8AQ9BWD3 113 aa18.58■□□□□ 0.57
SHMT1-201ENST00000316694 PNRC1Q12796 327 aaPredicted RBP18.58■□□□□ 0.56
SHMT1-201ENST00000316694 CDPF1Q6NVV7 123 aa18.58■□□□□ 0.56
SHMT1-201ENST00000316694 DRAM1Q8N682 238 aa18.58■□□□□ 0.56
SHMT1-201ENST00000316694 SCCPDHQ8NBX0 429 aa18.58■□□□□ 0.56
SHMT1-201ENST00000316694 OR10D4PQ8NGN7 298 aa18.58■□□□□ 0.56
SHMT1-201ENST00000316694 ZPBPQ9BS86 351 aa18.58■□□□□ 0.56
SHMT1-201ENST00000316694 WDR61Q9GZS3 305 aaKnown RBP18.58■□□□□ 0.56
SHMT1-201ENST00000316694 A0A1W2PNU3 283 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-201ENST00000316694 MAP1LC3B2A6NCE7 125 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 CLDN34H7C241 214 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 WNT2P09544 360 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 SERF2P84101 59 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 C4orf17Q53FE4 359 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 TMEM41BQ5BJD5 291 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 BEND4Q6ZU67 534 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 SPRY4Q9C004 299 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 MAP1LC3BQ9GZQ8 125 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 TINAGQ9UJW2 476 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 PPP1R2P9O14990 202 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 CYB5R3P00387 301 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-201ENST00000316694 TLE1Q04724 770 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 DCAF10Q5QP82 559 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 SSX3Q99909 188 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 GPR61Q9BZJ8 451 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 ARRDC1-AS1Q9H2J1 176 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 RBKSQ9H477 322 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 ZMAT5Q9UDW3 170 aaKnown RBP18.57■□□□□ 0.56
SHMT1-201ENST00000316694 VAX2Q9UIW0 290 aa18.57■□□□□ 0.56
SHMT1-201ENST00000316694 CDIPTO14735 213 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 NXPH2O95156 264 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 SOD3P08294 240 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 PLA2G5P39877 138 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 SLC38A11Q08AI6 406 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 OR2B11Q5JQS5 317 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 FGFRL1Q8N441 504 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 FRZBQ92765 325 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 SDF2L1Q9HCN8 221 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 SEC14L6B5MCN3 397 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 CLDN1O95832 211 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 TRGC1P0CF51 173 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 DMRT1Q9Y5R6 373 aa18.56■□□□□ 0.56
SHMT1-201ENST00000316694 PRRC2CQ9Y520 2896 aaKnown RBP18.55■□□□□ 0.56
SHMT1-201ENST00000316694 CELA3BP08861 270 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 MEOX1P50221 254 aa18.55■□□□□ 0.56
SHMT1-201ENST00000316694 MRGPRGQ86SM5 289 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 127.2 ms