RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 OR2Y1Q8NGV0 311 aa14.95□□□□□ -0.02
SYNE3-202ENST00000553340 MEGF10Q96KG7 1140 aa14.95□□□□□ -0.02
SYNE3-202ENST00000553340 HIST1H2AAQ96QV6 131 aa14.95□□□□□ -0.02
SYNE3-202ENST00000553340 MAP1LC3BQ9GZQ8 125 aa14.95□□□□□ -0.02
SYNE3-202ENST00000553340 PRO1933Q9H354 126 aa14.95□□□□□ -0.02
SYNE3-202ENST00000553340 PRUNE2Q8WUY3 3088 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 HS3ST1O14792 307 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 SYNGR1O43759 233 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 WNT2P09544 360 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 TCEAL6Q6IPX3 200 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 SLC23A3Q6PIS1 610 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 OR4X1Q8NH49 305 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 SAP25Q8TEE9 199 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 RBKSQ9H477 322 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 SRD5A3Q9H8P0 318 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 NAT8Q9UHE5 227 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 C5orf49A4QMS7 147 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 OR10V1Q8NGI7 309 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 OR5A2Q8NGI9 324 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 RDH5Q92781 318 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF845Q96IR2 970 aaPredicted RBP14.94□□□□□ -0.02
SYNE3-202ENST00000553340 SMIM7Q9BQ49 75 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF576Q9H609 170 aa14.94□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF737O75373 536 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 MRPL33O75394 65 aaKnown RBP14.93□□□□□ -0.02
SYNE3-202ENST00000553340 IGKV1-39P01597 117 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 IGKV1D-39P04432 117 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 CCL2P13500 99 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 MDKP21741 143 aaPredicted RBP14.93□□□□□ -0.02
SYNE3-202ENST00000553340 ADIRFQ15847 76 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 NCR3LG1Q68D85 454 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 IL1F10Q8WWZ1 152 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 GPR87Q9BY21 358 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 WDR61Q9GZS3 305 aaKnown RBP14.93□□□□□ -0.02
SYNE3-202ENST00000553340 A0A1B0GV90 55 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 ARF1P84077 181 aaKnown RBP14.93□□□□□ -0.02
SYNE3-202ENST00000553340 HAPLN4Q86UW8 402 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 APOBEC3DQ96AK3 386 aaPredicted RBP14.93□□□□□ -0.02
SYNE3-202ENST00000553340 TMEM45BQ96B21 275 aa14.93□□□□□ -0.02
SYNE3-202ENST00000553340 DVL1O14640 695 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 ZNHIT1O43257 154 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 ELLP55199 621 aaPredicted RBP14.92□□□□□ -0.02
SYNE3-202ENST00000553340 PMS2P11Q13670 270 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 JOSD1Q15040 202 aaPredicted RBP14.92□□□□□ -0.02
SYNE3-202ENST00000553340 TMEM241Q24JQ0 296 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 CYP2G1PQ6ZSU1 146 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 LHX4Q969G2 390 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 AGMATQ9BSE5 352 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 PARD6GQ9BYG4 376 aaPredicted RBP14.92□□□□□ -0.02
SYNE3-202ENST00000553340 SLC39A9Q9NUM3 307 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 NCKAP5O14513 1909 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 TNRC6BQ9UPQ9 1833 aaKnown RBP14.92□□□□□ -0.02
SYNE3-202ENST00000553340 A0A096LPE4 126 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 A0A1W2PPZ6 126 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 DEGS1O15121 323 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 C9orf135Q5VTT2 229 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 OR4C12Q96R67 309 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF552Q9H707 407 aaPredicted RBP14.92□□□□□ -0.02
SYNE3-202ENST00000553340 PRSS50Q9UI38 385 aa14.92□□□□□ -0.02
SYNE3-202ENST00000553340 TRAV24A0A0B4J272 114 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 LRRC3CA6NJW4 275 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 IGKV1-5P01602 117 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 PFN1P07737 140 aaKnown RBP14.91□□□□□ -0.02
SYNE3-202ENST00000553340 FOLR3P41439 243 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 MEF2BQ02080 365 aaPredicted RBP14.91□□□□□ -0.02
SYNE3-202ENST00000553340 SPANXN5Q5MJ07 72 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 C16orf82Q7Z2V1 217 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 RNASEH2CQ8TDP1 164 aaKnown RBP14.91□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF488Q96MN9 340 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 PYGO2Q9BRQ0 406 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 GAB2Q9UQC2 676 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 CFAP54Q96N23 3096 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 FGF7P21781 194 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 UNQ6494/PRO21346Q6UXR6 183 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 IFI44Q8TCB0 444 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 OR1A1Q9P1Q5 309 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 PPP1R3CQ9UQK1 317 aa14.91□□□□□ -0.02
SYNE3-202ENST00000553340 IGFBP4P22692 258 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 GDF1P27539 372 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 BSXQ3C1V8 233 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 BEND4Q6ZU67 534 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 OR1P1Q8NH06 330 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 TAF15Q92804 592 aaKnown RBP eCLIP14.9□□□□□ -0.02
SYNE3-202ENST00000553340 FSCN3Q9NQT6 498 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 TNRC6AQ8NDV7 1962 aaKnown RBP14.9□□□□□ -0.02
SYNE3-202ENST00000553340 PI4KAP42356 2102 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 NPIPB11E5RHQ5 1161 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 KBTBD11O94819 623 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 CD55P08174 381 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 COX5BP10606 129 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF16P17020 682 aaPredicted RBP14.9□□□□□ -0.02
SYNE3-202ENST00000553340 COL10A1Q03692 680 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 TGIF2LYQ8IUE0 185 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 FAM58AQ8N1B3 248 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 OR5B12Q96R08 314 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 LIN7CQ9NUP9 197 aaKnown RBP14.9□□□□□ -0.02
SYNE3-202ENST00000553340 DLL3Q9NYJ7 618 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 LAMP3Q9UQV4 416 aa14.9□□□□□ -0.02
SYNE3-202ENST00000553340 RBM7Q9Y580 266 aaKnown RBP14.9□□□□□ -0.02
SYNE3-202ENST00000553340 ZNF407Q9C0G0 2248 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms