RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ZNF845Q96IR2 970 aaPredicted RBP15.72■□□□□ 0.11
CCDC3-201ENST00000378825 SMIM7Q9BQ49 75 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 ATG101Q9BSB4 218 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 A8MWP6 167 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 PRDX4Q13162 271 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 JOSD1Q15040 202 aaPredicted RBP15.72■□□□□ 0.11
CCDC3-201ENST00000378825 TESK1Q15569 626 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 OR10G4Q8NGN3 311 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 SCGB1C1Q8TD33 95 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 HIST1H2AAQ96QV6 131 aa15.72■□□□□ 0.11
CCDC3-201ENST00000378825 USF3Q68DE3 2245 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 MAP1LC3B2A6NCE7 125 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 DFFBO76075 338 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 SERPINE2P07093 398 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 UMODP07911 640 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 ZNF16P17020 682 aaPredicted RBP15.71■□□□□ 0.11
CCDC3-201ENST00000378825 FKBP2P26885 142 aaKnown RBP15.71■□□□□ 0.11
CCDC3-201ENST00000378825 MDH2P40926 338 aaKnown RBP15.71■□□□□ 0.11
CCDC3-201ENST00000378825 FOXG1P55316 489 aaPredicted RBP15.71■□□□□ 0.11
CCDC3-201ENST00000378825 ZDHHC23Q8IYP9 409 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 PCGF1Q9BSM1 259 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 MAP1LC3BQ9GZQ8 125 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 GTF3C1Q12789 2109 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 EREGO14944 169 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 LILRA1O75019 489 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 PFN1P07737 140 aaKnown RBP15.71■□□□□ 0.11
CCDC3-201ENST00000378825 CLDN15P56746 228 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 CARD18P57730 90 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 B3GALT5-AS1P59052 145 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 PNRC1Q12796 327 aaPredicted RBP15.71■□□□□ 0.11
CCDC3-201ENST00000378825 SPANXN5Q5MJ07 72 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 GGNQ86UU5 652 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 OR1P1Q8NH06 330 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 TMEM37Q8WXS4 190 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 ABHD14BQ96IU4 210 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 OR4C12Q96R67 309 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 TMEM242Q9NWH2 141 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 PPP1R3CQ9UQK1 317 aa15.71■□□□□ 0.11
CCDC3-201ENST00000378825 MED12LQ86YW9 2145 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 XKRY2A2RUG3 117 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 LRRC3CA6NJW4 275 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 IGKV1-5P01602 117 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 OPN1MWP04001 364 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 OPN1MW2P0DN77 364 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 OPN1MW3P0DN78 364 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 PAX1P15863 534 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 OR8G1Q15617 311 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 RPP25LQ8N5L8 163 aaKnown RBP15.7■□□□□ 0.1
CCDC3-201ENST00000378825 CPT1CQ8TCG5 803 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 HIPK2Q9H2X6 1198 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF552Q9H707 407 aaPredicted RBP15.7■□□□□ 0.1
CCDC3-201ENST00000378825 PSENENQ9NZ42 101 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 ATP23Q9Y6H3 246 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 UBE2L5PA0A1B0GUS4 154 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF737O75373 536 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 CNOT4O95628 575 aaKnown RBP15.7■□□□□ 0.1
CCDC3-201ENST00000378825 FOXO1Q12778 655 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF124Q15973 351 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 SSX2Q16385 188 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 DPPA3Q6W0C5 159 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 OR5T1Q8NG75 326 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 MRPL30Q8TCC3 161 aaKnown RBP15.7■□□□□ 0.1
CCDC3-201ENST00000378825 MBD3L1Q8WWY6 194 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 PILRBQ9UKJ0 227 aa15.7■□□□□ 0.1
CCDC3-201ENST00000378825 IGHV1-45A0A0A0MS14 117 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 A0A1W2PPQ1 181 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF503-AS2A6NEH8 195 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 RAC3P60763 192 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 FGF12P61328 243 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 GNB2P62879 340 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 NCR3LG1Q68D85 454 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF324BQ6AW86 544 aaPredicted RBP15.69■□□□□ 0.1
CCDC3-201ENST00000378825 ZNF66Q6ZN08 573 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 OR5R1Q8NH85 324 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 SLC25A22Q9H936 323 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 GPR35Q9HC97 309 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 VAX2Q9UIW0 290 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 A0A1B0GUS0 222 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 SYNGR2O43760 224 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 NGFP01138 241 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 IGLV2-14P01704 120 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 MMP7P09237 267 aaPredicted RBP15.69■□□□□ 0.1
CCDC3-201ENST00000378825 FOSL1P15407 271 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 BMP5P22003 454 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 WIPI1Q5MNZ9 446 aaPredicted RBP15.69■□□□□ 0.1
CCDC3-201ENST00000378825 PMS2CLQ68D20 193 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 ABLIM2Q6H8Q1 611 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 OR8G2PQ6IF36 304 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 DBX2Q6ZNG2 339 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 PRRG4Q9BZD6 226 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 OR51B6Q9H340 312 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 AURKAIP1Q9NWT8 199 aaPredicted RBP15.69■□□□□ 0.1
CCDC3-201ENST00000378825 DNAJC13O75165 2243 aa15.69■□□□□ 0.1
CCDC3-201ENST00000378825 CYTIPO60759 359 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 OR4A8P0C604 315 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 COX6A1P12074 109 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 OR10D3Q8NH80 312 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 LHX4Q969G2 390 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 SRD5A3Q9H8P0 318 aa15.68■□□□□ 0.1
CCDC3-201ENST00000378825 WASF3Q9UPY6 502 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms