RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 C11orf40Q8WZ69 217 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 SPAG8Q99932 426 aaPredicted RBP4.29□□□□□ -1.72
CSMD3-201ENST00000297405 CHST5Q9GZS9 411 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 LAT2Q9GZY6 243 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 BRWD3Q6RI45 1802 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 ANKRD17O75179 2603 aaKnown RBP4.29□□□□□ -1.72
CSMD3-201ENST00000297405 TRAV8-2A0A0B4J237 113 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 CST7O76096 145 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 ADAMTSL4Q6UY14 1074 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 CHAC1Q9BUX1 264 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 NPVFQ9HCQ7 196 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 TAS2R4Q9NYW5 299 aa4.29□□□□□ -1.72
CSMD3-201ENST00000297405 CFAP20Q9Y6A4 193 aaKnown RBP4.29□□□□□ -1.72
CSMD3-201ENST00000297405 H0Y980 276 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 PRSS56P0CW18 603 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM53BQ14153 422 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 SPSB4Q96A44 273 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 CDCA3Q99618 268 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 MS4A8Q9BY19 250 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 KLF12Q9Y4X4 402 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 CD46P15529 392 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TNFRSF1AP19438 455 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 DYNLT3P51808 116 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 CST6Q15828 149 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 MESTQ5EB52 335 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TXNRD3NBQ6F5E7 133 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 SLC36A1Q7Z2H8 476 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 PEX11GQ96HA9 241 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ZMAT3Q9HA38 289 aaKnown RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 WBP1LQ9NX94 342 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TMEM150BA6NC51 233 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A10PA6NDY2 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A18PA6NE21 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A16PA6NEW6 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 OR4C46A6NHA9 309 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A20PA6NIJ5 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A8PA6NJQ4 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A7PA6NKC0 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A22PA8MWA6 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A12PA8MX19 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A5PA8MXJ8 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A23PA8MXZ1 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TNFSF13O75888 250 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A15PP0C7V4 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A13PP0C7W8 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A14PP0C7W9 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FAM90A24PP0C7X0 464 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 LMO2P25791 158 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 SRD5A2P31213 254 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TIAL1Q01085 375 aaKnown RBP eCLIP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TREML2Q5T2D2 321 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ASCL5Q7RTU5 278 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FBLIM1Q8WUP2 373 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 HIST1H2BAQ96A08 127 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 C1RLQ9NZP8 487 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 RPS4XP62701 263 aaKnown RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ZNF660Q6AZW8 331 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 Q6ZVU0 165 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ISOC2Q96AB3 205 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 LPAR5Q9H1C0 372 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 HINT3Q9NQE9 182 aaKnown RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 SIRT5Q9NXA8 310 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 NTMQ9P121 344 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 C19orf53Q9UNZ5 99 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 COA3Q9Y2R0 106 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 NOTCH2Q04721 2471 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 A0A1B0GWJ7 208 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TCRBV16S1A1N1A0A5B0 115 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 MKRN2OSH3BPM6 223 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ZFPL1O95159 310 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 SLC2A10O95528 541 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 NTN1O95631 604 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 CXCL3P19876 107 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 C1orf194Q5T5A4 169 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 MAVSQ7Z434 540 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 SCD5Q86SK9 330 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TBC1D26Q86UD7 250 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 DYNLRB2Q8TF09 96 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 OXGR1Q96P68 337 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 MRPS18AQ9NVS2 196 aaKnown RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 IL36GQ9NZH8 169 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 PLEKHB1Q9UF11 243 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ABCA12Q86UK0 2595 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FCGR3AP08637 254 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 CXCL12P48061 93 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 PRRT3Q5FWE3 981 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TSPO2Q5TGU0 170 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 OR10AC1Q8NH08 325 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 FIZ1Q96SL8 496 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 DECR2Q9NUI1 292 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 ANKRD10Q9NXR5 420 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 IGKV6D-41A0A0C4DH26 115 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 LRRC75BQ2VPJ9 315 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 C2orf73Q8N5S3 287 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 NXT2Q9NPJ8 142 aaKnown RBP4.28□□□□□ -1.72
CSMD3-201ENST00000297405 TNFRSF1BP20333 461 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 CYP2G1PQ6ZSU1 146 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 PAQR9Q6ZVX9 377 aa4.28□□□□□ -1.72
CSMD3-201ENST00000297405 OR2Z1Q8NG97 314 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms