RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 SLC25A15Q9Y619 301 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 POMT1Q9Y6A1 747 aa13.78□□□□□ -0.2
COL4A1-204ENST00000543140 CEP295Q9C0D2 2601 aa13.77□□□□□ -0.2
COL4A1-204ENST00000543140 JTBO76095 146 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 HOXD4P09016 255 aaPredicted RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 UCP1P25874 307 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 EIF5AP63241 154 aaKnown RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 GNMTQ14749 295 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 TESK1Q15569 626 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 WDR82Q6UXN9 313 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 ZGRF1Q86YA3 2104 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 OR10V1Q8NGI7 309 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 WFDC1Q9HC57 220 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 TREM2Q9NZC2 230 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 PLA2G2EQ9NZK7 142 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 PPP1R3CQ9UQK1 317 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 MEX3AA1L020 520 aaKnown RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 TSPAN4O14817 238 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 NUPL2O15504 423 aaKnown RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 MED6O75586 246 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 KITLGP21583 273 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 F2RP25116 425 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 NKX2-1P43699 371 aaPredicted RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 SRSF3P84103 164 aaKnown RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 MST1LQ2TV78 715 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 FIP1L1Q6UN15 594 aaKnown RBP13.77□□□□□ -0.21
COL4A1-204ENST00000543140 HES4Q9HCC6 221 aa13.77□□□□□ -0.21
COL4A1-204ENST00000543140 M0R1B8 84 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 SSSCA1O60232 199 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 GPR137BO60478 399 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 AESQ08117 197 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 MSMPQ1L6U9 139 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 MOB1BQ7L9L4 216 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 ASCL5Q7RTU5 278 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 LRP11Q86VZ4 500 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 ZFP57Q9NU63 452 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 KCNS2Q9ULS6 477 aa13.76□□□□□ -0.21
COL4A1-204ENST00000543140 H0Y980 276 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 PTBP3O95758 552 aaKnown RBP13.75□□□□□ -0.21
COL4A1-204ENST00000543140 IGLV2-14P01704 120 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 OR8U9P0C7N5 309 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 PSG2P11465 335 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 EPHA1P21709 976 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 S100GP29377 79 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 CEACAM6P40199 344 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 EIF2S3P41091 472 aaKnown RBP13.75□□□□□ -0.21
COL4A1-204ENST00000543140 LPAR6P43657 344 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 P2RY1P47900 373 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 CAV2P51636 162 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 DEFA5Q01523 94 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 IZUMO4Q1ZYL8 232 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 C1orf185Q5T7R7 199 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 EIF5AL1Q6IS14 154 aaKnown RBP13.75□□□□□ -0.21
COL4A1-204ENST00000543140 FAM53AQ6NSI3 398 aaPredicted RBP13.75□□□□□ -0.21
COL4A1-204ENST00000543140 ATRAIDQ6UW56 229 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 OR2Z1Q8NG97 314 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 OR8U1Q8NH10 309 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 ARL11Q969Q4 196 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 ESRP2Q9H6T0 727 aaKnown RBP13.75□□□□□ -0.21
COL4A1-204ENST00000543140 FAM24AA6NFZ4 105 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 GAPDHP04406 335 aaKnown RBP13.75□□□□□ -0.21
COL4A1-204ENST00000543140 VDAC1P21796 283 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 NMSQ5H8A3 153 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 GPR157Q5UAW9 335 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 ACP7Q6ZNF0 438 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 OR5D13Q8NGL4 314 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 TMEM231Q9H6L2 316 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 METRNQ9UJH8 293 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 PCNX1Q96RV3 2341 aa13.75□□□□□ -0.21
COL4A1-204ENST00000543140 SERPINE2P07093 398 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 ZNF16P17020 682 aaPredicted RBP13.74□□□□□ -0.21
COL4A1-204ENST00000543140 M6PRP20645 277 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 OMGP23515 440 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 ID4P47928 161 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 SHEQ5VZ18 495 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 VHLLQ6RSH7 139 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 SPIN2AQ99865 258 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 SPIN2BQ9BPZ2 258 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 MBNL3Q9NUK0 354 aaKnown RBP13.74□□□□□ -0.21
COL4A1-204ENST00000543140 WASF3Q9UPY6 502 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 A0A0G2JRQ6 117 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 CRYABP02511 175 aaKnown RBP13.74□□□□□ -0.21
COL4A1-204ENST00000543140 ATF4P18848 351 aaPredicted RBP13.74□□□□□ -0.21
COL4A1-204ENST00000543140 MBNL2Q5VZF2 373 aaKnown RBP13.74□□□□□ -0.21
COL4A1-204ENST00000543140 TPRX1Q8N7U7 411 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 OR1L1Q8NH94 360 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 GLS2Q9UI32 602 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 WIPI2Q9Y4P8 454 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 PLCE1Q9P212 2302 aa13.74□□□□□ -0.21
COL4A1-204ENST00000543140 RAB19A4D1S5 217 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 NPIPB11E5RHQ5 1161 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.73□□□□□ -0.21
COL4A1-204ENST00000543140 OR3A1P47881 315 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 OR2C3Q8N628 320 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 UBAC2Q8NBM4 344 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 SMIM8Q96KF7 97 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 CUL9Q8IWT3 2517 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 TMEM30CPA0ZSE6 113 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 ABCD4O14678 606 aa13.73□□□□□ -0.21
COL4A1-204ENST00000543140 AGPAT2O15120 278 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms