RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MIDNQ504T8 468 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 CXorf66Q5JRM2 361 aaPredicted RBP12.58□□□□□ -0.4
NUP54-217ENST00000514987 CLEC9AQ6UXN8 241 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 C5orf24Q7Z6I8 188 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 FAM169BQ8N8A8 192 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 ZBTB34Q8NCN2 500 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 OR8U1Q8NH10 309 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 IL1F10Q8WWZ1 152 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 BCL2L14Q9BZR8 327 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 PARD6AQ9NPB6 346 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 PLSCR4Q9NRQ2 329 aa12.58□□□□□ -0.4
NUP54-217ENST00000514987 TMEM30CPA0ZSE6 113 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 BTBD17A6NE02 478 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 ZNF891A8MT65 544 aaPredicted RBP12.57□□□□□ -0.4
NUP54-217ENST00000514987 H7C2Y5 167 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 CEACAM4O75871 244 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 DFFBO76075 338 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 HAND1O96004 215 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 CTRB1P17538 263 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 KITLGP21583 273 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 FLI1Q01543 452 aaPredicted RBP12.57□□□□□ -0.4
NUP54-217ENST00000514987 P2RY6Q15077 328 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 TESK1Q15569 626 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 CTRB2Q6GPI1 263 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 WDR31Q8NA23 367 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 HSD17B11Q8NBQ5 300 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 RNASE11Q8TAA1 199 aaKnown RBP12.57□□□□□ -0.4
NUP54-217ENST00000514987 PRR7Q8TB68 274 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 AIFM2Q9BRQ8 373 aa12.57□□□□□ -0.4
NUP54-217ENST00000514987 A0A1W2PR80 420 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 TNFSF12O43508 249 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 CHST1O43916 411 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 GRPP07492 148 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 MSMO1Q15800 293 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 GUK1Q16774 197 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 ACSF3Q4G176 576 aaPredicted RBP12.56□□□□□ -0.4
NUP54-217ENST00000514987 SLC35E4Q6ICL7 350 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 DPPA3Q6W0C5 159 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 STX12Q86Y82 276 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 C9orf106Q8NAJ2 232 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 GPR146Q96CH1 333 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 OR1A1Q9P1Q5 309 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 RBM7Q9Y580 266 aaKnown RBP12.56□□□□□ -0.4
NUP54-217ENST00000514987 NCOR1O75376 2440 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 FRYLO94915 3013 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 FAM157AC9JC47 383 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 PROB1E7EW31 1015 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 K7N7A8 449 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 AGPAT2O15120 278 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 PSG2P11465 335 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 CEACAM1P13688 526 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 ERVS71-1P61550 626 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 ESPL1Q14674 2120 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 ZNF718Q3SXZ3 478 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 ZADH2Q8N4Q0 377 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 OR2G3Q8NGZ4 309 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 OR51H1Q8NH63 302 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 MAGT1Q9H0U3 335 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 SH3BGRL3Q9H299 93 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 RNF115Q9Y4L5 304 aa12.56□□□□□ -0.4
NUP54-217ENST00000514987 VPS13AQ96RL7 3174 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 WDFY3Q8IZQ1 3526 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 CFAP54Q96N23 3096 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 OOEPA6NGQ2 149 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 C1QTNF9BB2RNN3 333 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 IFNL4K9M1U5 179 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 WDR1O75083 606 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 IGLV1-44P01699 117 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 GCH1P30793 250 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 MPV17P39210 176 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 CLINT1Q14677 625 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 EIF2S3LQ2VIR3 472 aaKnown RBP12.55□□□□□ -0.4
NUP54-217ENST00000514987 ALKBH6Q3KRA9 238 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 OR5C1Q8NGR4 320 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 GALMQ96C23 342 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 ATP5SQ99766 215 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 PROCRQ9UNN8 238 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 WSB1Q9Y6I7 421 aa12.55□□□□□ -0.4
NUP54-217ENST00000514987 ATP6V1G2-DDX39BF2Z307 99 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 TIMM8AO60220 97 aaPredicted RBP12.54□□□□□ -0.4
NUP54-217ENST00000514987 ATP6V0CP27449 155 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 CEACAM6P40199 344 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 ID4P47928 161 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 NPBWR1P48145 328 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 DYNLT3P51808 116 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 TAS2R30P59541 319 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 RAB2AP61019 212 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 DEFB109BQ30KR1 87 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 MBNL2Q5VZF2 373 aaKnown RBP12.54□□□□□ -0.4
NUP54-217ENST00000514987 VWA1Q6PCB0 445 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 TRAT1Q6PIZ9 186 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 TMEM182Q6ZP80 229 aaPredicted RBP12.54□□□□□ -0.4
NUP54-217ENST00000514987 BEND4Q6ZU67 534 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 TCTEX1D1Q8N7M0 179 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 FAM213BQ8TBF2 198 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 GPHA2Q96T91 129 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 EIF5A2Q9GZV4 153 aaKnown RBP12.54□□□□□ -0.4
NUP54-217ENST00000514987 TOLLIPQ9H0E2 274 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 TINAGQ9UJW2 476 aa12.54□□□□□ -0.4
NUP54-217ENST00000514987 KCNS2Q9ULS6 477 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 124.3 ms