RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 BAGE2Q86Y30 109 aa11.89□□□□□ -0.51
HDAC1-206ENST00000476391 DYRK2Q92630 601 aa11.89□□□□□ -0.51
HDAC1-206ENST00000476391 SHANK1Q9Y566 2161 aa11.89□□□□□ -0.51
HDAC1-206ENST00000476391 TMED7-TICAM2A0A0A6YYA0 188 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 TMPRSS2O15393 492 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 ZNF253O75346 499 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 PGCP20142 388 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 TCTN1Q2MV58 587 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 SGMS2Q8NHU3 365 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 NEIL1Q96FI4 390 aaPredicted RBP11.88□□□□□ -0.51
HDAC1-206ENST00000476391 MRGPRX1Q96LB2 322 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 KLHL13Q9P2N7 655 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 HCFC2Q9Y5Z7 792 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 TET1Q8NFU7 2136 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 TRAV9-1A0A075B6T8 112 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 IGLC7A0M8Q6 106 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 PPYP01298 95 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 FCGR2AP12318 317 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 OR1D4P47884 311 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 CLDN18P56856 261 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 RNPS1Q15287 305 aaKnown RBP11.88□□□□□ -0.51
HDAC1-206ENST00000476391 PRR27Q6MZM9 219 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 TCF23Q7RTU1 214 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 TBC1D26Q86UD7 250 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 ZNF525Q8N782 197 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 ELSPBP1Q96BH3 223 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 PLA2G3Q9NZ20 509 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 IL19Q9UHD0 177 aa11.88□□□□□ -0.51
HDAC1-206ENST00000476391 MYO7BQ6PIF6 2116 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 NUDT14O95848 222 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 CTSEP14091 401 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 BCL2L2Q92843 193 aaPredicted RBP11.87□□□□□ -0.51
HDAC1-206ENST00000476391 RBM24Q9BX46 236 aaKnown RBP11.87□□□□□ -0.51
HDAC1-206ENST00000476391 SH3BGRL2Q9UJC5 107 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 TRAV34A0A0B4J273 112 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 PRRT4C9JH25 899 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 NPIPA2E9PIF3 369 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 MS4A18H0YCH9 400 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 TNFSF12O43508 249 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 MS4A18Q3C1V0 323 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 LRRC10Q5BKY1 277 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 ZNF468Q5VIY5 522 aaPredicted RBP11.87□□□□□ -0.51
HDAC1-206ENST00000476391 SAXO1Q8IYX7 474 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 RPP25LQ8N5L8 163 aaKnown RBP11.87□□□□□ -0.51
HDAC1-206ENST00000476391 PP6455Q8WZ26 134 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 OR5P3Q8WZ94 311 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 GMPPAQ96IJ6 420 aaPredicted RBP11.87□□□□□ -0.51
HDAC1-206ENST00000476391 ZNF430Q9H8G1 570 aaPredicted RBP11.87□□□□□ -0.51
HDAC1-206ENST00000476391 CHODLQ9H9P2 273 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 LHFPL6Q9Y693 200 aa11.87□□□□□ -0.51
HDAC1-206ENST00000476391 BLACEA4D250 179 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 GALR2O43603 387 aaPredicted RBP11.86□□□□□ -0.51
HDAC1-206ENST00000476391 REG1AP05451 166 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 ACRP10323 421 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 FAHP16930 419 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 GNRHRP30968 328 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 GABRA2P47869 451 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 HBG1P69891 147 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 HBG2P69892 147 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 TMEM267Q0VDI3 215 aaPredicted RBP11.86□□□□□ -0.51
HDAC1-206ENST00000476391 OR8B8Q15620 311 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 SPIN3Q5JUX0 258 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 WDR5BQ86VZ2 330 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 ZIC4Q8N9L1 334 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 BAHD1Q8TBE0 780 aaPredicted RBP11.86□□□□□ -0.51
HDAC1-206ENST00000476391 ZNF721Q8TF20 911 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 WDR61Q9GZS3 305 aaKnown RBP11.86□□□□□ -0.51
HDAC1-206ENST00000476391 TAAR3PQ9P1P4 343 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 RNF114Q9Y508 228 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 TIMM9Q9Y5J7 89 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 ATG2BQ96BY7 2078 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 CTXND1A0A1B0GTU2 59 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 CLPSP04118 112 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 VIPR2P41587 438 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 SNAI3Q3KNW1 292 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 SLC39A11Q8N1S5 342 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 RTN4RQ9BZR6 473 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 MRPL18Q9H0U6 180 aaKnown RBP11.86□□□□□ -0.51
HDAC1-206ENST00000476391 NRN1Q9NPD7 142 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 PRTFDC1Q9NRG1 225 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 TBC1D29Q9UFV1 150 aa11.86□□□□□ -0.51
HDAC1-206ENST00000476391 MUC22E2RYF6 1773 aaPredicted RBP11.86□□□□□ -0.51
HDAC1-206ENST00000476391 PIGBOS1A0A0B4J2F0 54 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 H3BP45 60 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 SH2D1BO14796 132 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 PRKNO60260 465 aaPredicted RBP11.85□□□□□ -0.51
HDAC1-206ENST00000476391 TOX4O94842 621 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 SLC25A6P12236 298 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 BIDP55957 195 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 DMRTC1Q5HYR2 192 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 FAM180AQ6UWF9 173 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 MYPOPQ86VE0 399 aaPredicted RBP11.85□□□□□ -0.51
HDAC1-206ENST00000476391 ZNF295-AS1Q8N0V1 137 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 POLR1DQ9Y2S0 133 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 TBL2Q9Y4P3 447 aaKnown RBP11.85□□□□□ -0.51
HDAC1-206ENST00000476391 SAA2-SAA4A0A096LPE2 208 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 DPRXA6NFQ7 191 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 GDF9O60383 454 aa11.85□□□□□ -0.51
HDAC1-206ENST00000476391 NXPH3O95157 252 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 565 ms