RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 SSX7Q7RTT5 188 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ZFP62Q8NB50 900 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TXN2Q99757 166 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF286AQ9HBT8 521 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 HES4Q9HCC6 221 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TMED7-TICAM2A0A0A6YYA0 188 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 M0QZK8 103 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 VAMP5O95183 116 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 FCGR2CP31995 323 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 CFHR1Q03591 330 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 PDCD1Q15116 288 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 FAM27BQ5VT28 67 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 DPPA2Q7Z7J5 298 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 OR2C3Q8N628 320 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 GVQW1Q8N7I0 195 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 FAM60AQ9NP50 221 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 NECAP2Q9NVZ3 263 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 A0A1W2PN81 502 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 C17orf112F2Z3M2 114 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 M0R1B8 84 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 DLEU1O43261 78 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 PGA4P0DJD7 388 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ATP6V0CP27449 155 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 CHRNA7P36544 502 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RBX1P62877 108 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM196Q5HYL7 178 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RNF144BQ7Z419 303 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 FAM24BQ8N5W8 94 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 DAZAP1Q96EP5 407 aaKnown RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TCEAL2Q9H3H9 227 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TRPM6Q9BX84 2022 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ZFP92A6NM28 416 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 MRPL33O75394 65 aaKnown RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 HBE1P02100 147 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TRGC1P0CF51 173 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ST6GAL1P15907 406 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 NQO2P16083 231 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 DEFA6Q01524 100 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RNF151Q2KHN1 245 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TBC1D28Q2M2D7 210 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM190Q8WZ59 177 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TRIB1Q96RU8 372 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 NICN1Q9BSH3 213 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM208Q9BTX3 173 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 ULBP2Q9BZM5 246 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 DEFB127Q9H1M4 99 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 PLK3Q9H4B4 646 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TP53TG3Q9ULZ0 132 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 A0A1W2PR77 199 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 OVOL3O00110 214 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RAMP1O60894 148 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 CLDN1O95832 211 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RAB31Q13636 194 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 UNQ6494/PRO21346Q6UXR6 183 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 RTN4IP1Q8WWV3 396 aaPredicted RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 LSM10Q969L4 123 aaKnown RBP4.6□□□□□ -1.67
SYNE1-220ENST00000471834 CMBLQ96DG6 245 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM59Q9BXS4 323 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 TAAR3PQ9P1P4 343 aa4.6□□□□□ -1.67
SYNE1-220ENST00000471834 LINC01565O15544 149 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF93P35789 620 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ENDOGQ14249 297 aaKnown RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF726P1Q15940 193 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 DMRTC1Q5HYR2 192 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 OR8G2PQ6IF36 304 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CLEC2AQ6UVW9 174 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 HAPLN4Q86UW8 402 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CISD2Q8N5K1 135 aaKnown RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 OR6C3Q9NZP0 311 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 COA3Q9Y2R0 106 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 URGCP-MRPS24S4R325 110 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 F5P12259 2224 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ANKUB1A6NFN9 424 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 TSTD3H0UI37 97 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 H0Y8X5 98 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 HRKO00198 91 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CCL21O00585 134 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ZFAND5O76080 213 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 PF4P02776 101 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CCKARP32238 428 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 RPS10P46783 165 aaKnown RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 RHOGP84095 191 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 EWSR1Q01844 656 aaKnown RBP eCLIP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF718Q3SXZ3 478 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ACTL10Q5JWF8 245 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 PARM1Q6UWI2 310 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ROBO4Q8WZ75 1007 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 WNT2BQ93097 391 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 REEP6Q96HR9 211 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 PBOV1Q9GZY1 135 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM231Q9H6L2 316 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 TRANK1O15050 2925 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 TRAV17A0A0B4J275 112 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF814B7Z6K7 855 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF587BE7ETH6 402 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CDX4O14627 284 aaPredicted RBP4.59□□□□□ -1.67
SYNE1-220ENST00000471834 DEGS1O15121 323 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 RD3LP0DJH9 198 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 CD27P26842 260 aa4.59□□□□□ -1.67
SYNE1-220ENST00000471834 ERVFC1-1P60608 527 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms