RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 THBS3P49746 956 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 SLC35B1P78383 322 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 TMEM30BQ3MIR4 351 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 OR2W3Q7Z3T1 314 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 TGIF2LXQ8IUE1 241 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 MRPL41Q8IXM3 137 aaKnown RBP13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 STPG2Q8N412 459 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 JAGN1Q8N5M9 183 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 OR2T10Q8NGZ9 312 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 RTN4IP1Q8WWV3 396 aaPredicted RBP13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 OR14A2Q96R54 314 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 GPR61Q9BZJ8 451 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 RAB9BQ9NP90 201 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 ETAA1Q9NY74 926 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 CNOT2Q9NZN8 540 aaKnown RBP13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 LINC00527Q9UJ94 153 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 A0A1W2PPK0 400 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 FAM90A10PA6NDY2 464 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 EFCAB10A6NFE3 127 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 FAM90A7PA6NKC0 464 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 FAM90A23PA8MXZ1 464 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 C12orf77C9JDV5 145 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 K7EIL1 84 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 SPINT2O43291 252 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 CD1BP29016 333 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 C6orf183Q5T699 404 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 SYT6Q5T7P8 510 aaPredicted RBP13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 AWAT2Q6E213 333 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 FAM53AQ6NSI3 398 aaPredicted RBP13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 GAPTQ8N292 157 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 Q8N9W7 124 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 ZNF439Q8NDP4 499 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 TMEM104Q8NE00 496 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 DERL3Q96Q80 235 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 LIN7CQ9NUP9 197 aaKnown RBP13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 TRAPPC2LQ9UL33 140 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 RYR3Q15413 4870 aa13.07□□□□□ -0.32
CCDC28B-204ENST00000469003 PNMA8CA0A1B0GUJ8 204 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 NCBP2LA6PVI3 153 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 NUDT19A8MXV4 375 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 AP4M1O00189 453 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 TXNL1O43396 289 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 MAS1P04201 325 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 CD1AP06126 327 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 MYCNOSP40205 109 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 ZNF137PP52743 207 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 KRTAP10-11P60412 298 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 EGFEM1PQ0D2K5 195 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 RAB12Q6IQ22 244 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 TRAT1Q6PIZ9 186 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 SLC25A48Q6ZT89 311 aaKnown RBP13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 C18orf65Q6ZTR6 163 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 C8orf86Q6ZUL3 223 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 LYPD6Q86Y78 171 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 OR4K15Q8NH41 348 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 ABCG5Q9H222 651 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 BANF2Q9H503 90 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 GNG12Q9UBI6 72 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 PEX16Q9Y5Y5 336 aa13.06□□□□□ -0.32
CCDC28B-204ENST00000469003 LINC01548A6NM66 108 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 SLC31A2O15432 143 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 CA11O75493 328 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 SC5DO75845 299 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 MOSP00540 346 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 HBZP02008 142 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 GLAP06280 429 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 MGMTP16455 207 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 CELP19835 753 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 CAPGP40121 348 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 GPR12P47775 334 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 WNT4P56705 351 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 DOC2BQ14184 412 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 LAIR2Q6ISS4 152 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 C8orf59Q8N0T1 100 aaPredicted RBP13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 NKAIN3Q8N8D7 197 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 KLHL30-AS1Q8NEE0 82 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 THRSPQ92748 146 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 DPF1Q92782 380 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 MCRIP2Q9BUT9 160 aaKnown RBP13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 GON7Q9BXV9 100 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 SELENOIQ9C0D9 397 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 PLSCR3Q9NRY6 295 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 PLCXD1Q9NUJ7 323 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 PSORS1C1Q9UIG5 152 aa13.05□□□□□ -0.32
CCDC28B-204ENST00000469003 WI2-2373I1.2A0A1W2PRP0 233 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 MYL12BO14950 172 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 CRTAPO75718 401 aaPredicted RBP13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 GNAO1P09471 354 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 FUT3P21217 361 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 HOXD3P31249 432 aaPredicted RBP13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 ZNF134P52741 427 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 RCN1Q15293 331 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 PNLIPRP3Q17RR3 467 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 CT45A1Q5HYN5 189 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 TEX38Q6PEX7 206 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 ZNF695Q8IW36 515 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 OR8H1Q8NGG4 311 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 OR10V1Q8NGI7 309 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 OR1L1Q8NH94 360 aa13.04□□□□□ -0.32
CCDC28B-204ENST00000469003 CT45A3Q8NHU0 189 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 157.3 ms