RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 PGPEP1LA6NFU8 196 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 CRYAAP02489 173 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 P2RY1P47900 373 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 IL15RAQ13261 267 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 ZNF385CQ66K41 422 aaPredicted RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 ZNF826PQ6ZT77 177 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 OR10V1Q8NGI7 309 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 TMEM37Q8WXS4 190 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 PP6455Q8WZ26 134 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 TXN2Q99757 166 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 UBE2ZQ9H832 354 aaPredicted RBP7.42□□□□□ -1.22
USP40-203ENST00000427112 MOB1AQ9H8S9 216 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 PROK2Q9HC23 129 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 COL6A6A6NMZ7 2263 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 GAMTQ14353 236 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 HERPUD1Q15011 391 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 IL22RA1Q8N6P7 574 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 TREM2Q9NZC2 230 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 HDGFL3Q9Y3E1 203 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 APC2O95996 2303 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 NCKAP5O14513 1909 aa7.42□□□□□ -1.22
USP40-203ENST00000427112 A0A1B0GTQ1 180 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 A0A1W2PNV4 684 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 AP4M1O00189 453 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 SPINK4O60575 86 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 PDCD6O75340 191 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 CLDN1O95832 211 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 SOD3P08294 240 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 FUT3P21217 361 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 CNN3Q15417 329 aaKnown RBP7.41□□□□□ -1.22
USP40-203ENST00000427112 RABEPKQ7Z6M1 372 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 BOD1Q96IK1 185 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 OR2H1Q9GZK4 316 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 MSL2Q9HCI7 577 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 MTCH1Q9NZJ7 389 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 TIMM10BQ9Y5J6 103 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 PCNX2A6NKB5 2137 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 YLPM1P49750 1951 aaKnown RBP7.41□□□□□ -1.22
USP40-203ENST00000427112 FAM157AC9JC47 383 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 MAGEA5P43359 124 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 PLGLB1Q02325 96 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 C17orf82Q86X59 251 aaPredicted RBP7.41□□□□□ -1.22
USP40-203ENST00000427112 OR1J1Q8NGS3 322 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 AP1S3Q96PC3 154 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 HIST1H2AAQ96QV6 131 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 PHF7Q9BWX1 381 aaPredicted RBP7.41□□□□□ -1.22
USP40-203ENST00000427112 FGF23Q9GZV9 251 aaPredicted RBP7.41□□□□□ -1.22
USP40-203ENST00000427112 TMEM38BQ9NVV0 291 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 SELENOKQ9Y6D0 94 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 A0A1W2PPQ1 181 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 TRAPPC2LH3BP13 241 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 TAAR5O14804 337 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 SYNGR3O43761 229 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 WISP2O76076 250 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 HEXAP06865 529 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 RBM11P57052 281 aaKnown RBP7.41□□□□□ -1.22
USP40-203ENST00000427112 ARL16Q0P5N6 197 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 TRIM61Q5EBN2 209 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 C15orf54Q8N8G6 183 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 PSMF1Q92530 271 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 NIPSNAP3BQ9BS92 247 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 RPRMQ9NS64 109 aa7.41□□□□□ -1.22
USP40-203ENST00000427112 IGKV1-6A0A0C4DH72 117 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 SLC22A20A6NK97 555 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 CELA3BP08861 270 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 RAB1AP62820 205 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 LURAP1LQ8IV03 231 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 ASB13Q8WXK3 278 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 DCTN5Q9BTE1 182 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 PLEKHA2Q9HB19 425 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 TRAPPC2LQ9UL33 140 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 SIT1Q9Y3P8 196 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 IFITM10A6NMD0 228 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 SNAPC5O75971 98 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 COX6A1P12074 109 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 EPHA8P29322 1005 aaPredicted RBP7.4□□□□□ -1.22
USP40-203ENST00000427112 DDTP30046 118 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 CHRNA7P36544 502 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 FOLR3P41439 243 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 ZNF133P52736 654 aaPredicted RBP7.4□□□□□ -1.22
USP40-203ENST00000427112 Q0VFX4 171 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 EDDM3AQ14507 147 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 SELENOHQ8IZQ5 122 aaKnown RBP7.4□□□□□ -1.22
USP40-203ENST00000427112 ST6GALNAC3Q8NDV1 305 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 CPT1CQ8TCG5 803 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 HINT2Q9BX68 163 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 CLN8Q9UBY8 286 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 ZNF107Q9UII5 783 aaPredicted RBP7.4□□□□□ -1.22
USP40-203ENST00000427112 V9GYS6 101 aa7.4□□□□□ -1.22
USP40-203ENST00000427112 ZNF320A2RRD8 509 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 WNT9BO14905 357 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 SLC31A2O15432 143 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 KLF7O75840 302 aaPredicted RBP7.4□□□□□ -1.23
USP40-203ENST00000427112 OPN1MWP04001 364 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 OPN1MW2P0DN77 364 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 OPN1MW3P0DN78 364 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 GCSAMLQ5JQS6 135 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 ZNF100Q8IYN0 542 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 SCGB1C1Q8TD33 95 aa7.4□□□□□ -1.23
USP40-203ENST00000427112 GPR146Q96CH1 333 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms