RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 LINC00312Q9Y6C7 94 aa11.79□□□□□ -0.52
SKA1-202ENST00000398452 hCG_1809904A0A1W2PP81 198 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 A0A1W2PPE2 198 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 A0A1W2PR64 198 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 A0A1W2PRV1 198 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 ZNF729A6NN14 1252 aaPredicted RBP11.78□□□□□ -0.52
SKA1-202ENST00000398452 M0QYG6 137 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 BET1O15155 118 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 PTTG1O95997 202 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 CD74P04233 296 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 GSTT2P0CG29 244 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 RCC1P18754 421 aaPredicted RBP11.78□□□□□ -0.52
SKA1-202ENST00000398452 IFITM3Q01628 133 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 C11orf91Q3C1V1 193 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 VAX1Q5SQQ9 334 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 WDR25Q64LD2 544 aaPredicted RBP11.78□□□□□ -0.52
SKA1-202ENST00000398452 ZNF880Q6PDB4 577 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 ARRDC1Q8N5I2 433 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 OR4C16Q8NGL9 310 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 OR6F1Q8NGZ6 308 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 OR10J5Q8NHC4 309 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 SNAPC3Q92966 411 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 C11orf54Q9H0W9 315 aaPredicted RBP11.78□□□□□ -0.52
SKA1-202ENST00000398452 MBNL3Q9NUK0 354 aaKnown RBP11.78□□□□□ -0.52
SKA1-202ENST00000398452 COPZ2Q9P299 210 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 ACANP16112 2415 aa11.78□□□□□ -0.52
SKA1-202ENST00000398452 TRAV39A0A0B4J263 110 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 FOXH1O75593 365 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 OR5H8P0DN80 308 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 HERV-K104P61576 105 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 HMGN3Q15651 99 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 TMEM30BQ3MIR4 351 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 BTN2A1Q7KYR7 527 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 MINDY2Q8NBR6 621 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 OR13A1Q8NGR1 328 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 CLDND2Q8NHS1 167 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 KIRREL1Q96J84 757 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 ZNF714Q96N38 554 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 SCGB3A2Q96PL1 93 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 DCTN5Q9BTE1 182 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 TINAGL1Q9GZM7 467 aaPredicted RBP11.77□□□□□ -0.53
SKA1-202ENST00000398452 TAS2R3Q9NYW6 316 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 TBC1D24Q9ULP9 559 aa11.77□□□□□ -0.53
SKA1-202ENST00000398452 RBM7Q9Y580 266 aaKnown RBP11.77□□□□□ -0.53
SKA1-202ENST00000398452 NAV3Q8IVL0 2385 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 MAP1AP78559 2803 aaPredicted RBP11.76□□□□□ -0.53
SKA1-202ENST00000398452 LOC105371242A0A075B767 164 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 FAM172BPA6NC97 362 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 C12orf77C9JDV5 145 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 F5H0A9 414 aaPredicted RBP11.76□□□□□ -0.53
SKA1-202ENST00000398452 SDCBPO00560 298 aaPredicted RBP11.76□□□□□ -0.53
SKA1-202ENST00000398452 PLA2G10O15496 165 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 RGS11O94810 467 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 IGHV2-5P01817 119 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 HBZP02008 142 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 SCTP09683 121 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 ZBTB25P24278 435 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 ECI1P42126 302 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 RFX2P48378 723 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 Q5PR19 223 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 PLET1Q6UQ28 207 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 OR51S1Q8NGJ8 323 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 OR56B4Q8NH76 319 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 CYYR1Q96J86 154 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 CALYQ9NYX4 217 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 GNG12Q9UBI6 72 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 ZNF69Q9UC07 566 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 SLC23A1Q9UHI7 598 aa11.76□□□□□ -0.53
SKA1-202ENST00000398452 IGHV4-30-2A0A087WSY4 118 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 IGKV1D-8A0A087WSZ0 117 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 PPIAL4CA0A0B4J2A2 164 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 KBTBD11-OT1A0A1B0GTJ5 212 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 LIPFP07098 398 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 PPIAL4GP0DN37 164 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 CD99P14209 185 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 USF1P22415 310 aaPredicted RBP11.75□□□□□ -0.53
SKA1-202ENST00000398452 RBMS2Q15434 407 aaKnown RBP11.75□□□□□ -0.53
SKA1-202ENST00000398452 LTC4SQ16873 150 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 FAAP20Q6NZ36 180 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 PRSS57Q6UWY2 283 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 IDO2Q6ZQW0 420 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 OVCH2Q7RTZ1 564 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 RFESDQ8TAC1 157 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 CORO2AQ92828 525 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 ZNF2Q9BSG1 426 aaPredicted RBP11.75□□□□□ -0.53
SKA1-202ENST00000398452 OR2S2Q9NQN1 319 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 C19orf12Q9NSK7 152 aa11.75□□□□□ -0.53
SKA1-202ENST00000398452 MEX3AA1L020 520 aaKnown RBP11.74□□□□□ -0.53
SKA1-202ENST00000398452 PHF1O43189 567 aaPredicted RBP11.74□□□□□ -0.53
SKA1-202ENST00000398452 ENSAO43768 121 aaKnown RBP11.74□□□□□ -0.53
SKA1-202ENST00000398452 ZNF728P0DKX0 622 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 PGAM2P15259 253 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 FPR2P25090 351 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 FCGR2CP31995 323 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 SSTR5P35346 364 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 HTD2P86397 168 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 CR1LQ2VPA4 569 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 IGSF11Q5DX21 431 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 TMEM200BQ69YZ2 307 aa11.74□□□□□ -0.53
SKA1-202ENST00000398452 BTNL3Q6UXE8 466 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms