RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 ZNF502Q8TBZ5 544 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 RPUSD4Q96CM3 377 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 RP1P56715 2156 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 ARNTLO00327 626 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 TMEM127O75204 238 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SPDEFO95238 335 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 REG1AP05451 166 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 CCL3L1P16619 93 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 WT1P19544 449 aaPredicted RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 CEACAM6P40199 344 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 ALKBH1Q13686 389 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 ZNF181Q2M3W8 571 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 MAVSQ7Z434 540 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 C2CD4CQ8TF44 421 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 RCHY1Q96PM5 261 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SLIRPQ9GZT3 109 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 COQ10BQ9H8M1 238 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 TREM1Q9NP99 234 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 BATF3Q9NR55 127 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 ABCA2Q9BZC7 2435 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FXYD6-FXYD2A0A087WZ82 144 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 LOC107986453A0A1B0GWG9 222 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FAM24AA6NFZ4 105 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 LINC00587B1AMM8 73 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 NDUFA4O00483 81 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FABP7O15540 132 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SULT1A3P0DMM9 295 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SULT1A4P0DMN0 295 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 PSG1P11464 419 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 MGMTP16455 207 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 PRCDQ00LT1 54 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FAM122BQ7Z309 247 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 BPIFA4PQ86YQ2 179 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 TEX45Q8NA69 505 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 OR8J2Q8NGG1 315 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 ST6GAL2Q96JF0 529 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 VSTM2LQ96N03 204 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 TMPRSS13Q9BYE2 586 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FXYD6Q9H0Q3 95 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SAV1Q9H4B6 383 aaPredicted RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 GEMIN7Q9H840 131 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 HIGD1AQ9Y241 93 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 CBY3A6NI87 242 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 INSP01308 110 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SLC25A5P05141 298 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 NKX2-1P43699 371 aaPredicted RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 ZNF137PP52743 207 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 RPS20P60866 119 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 RNF212Q495C1 297 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SMUG1Q53HV7 270 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 OTUD1Q5VV17 481 aaPredicted RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 OR8G2PQ6IF36 304 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 RNASEKQ6P5S7 137 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 TREML4Q6UXN2 200 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 PDPNQ86YL7 162 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 CLECL1Q8IZS7 167 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 NPWQ8N729 165 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SUN5Q8TC36 379 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 TMEM106AQ96A25 262 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 KCNA7Q96RP8 456 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 NEU1Q99519 415 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 DPCDQ9BVM2 203 aaPredicted RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 ADGRL4Q9HBW9 690 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FLRT3Q9NZU0 649 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 TRAV41A0A0B4J266 112 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 MFSD2BA6NFX1 497 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FBLL1A6NHQ2 334 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 MGPP08493 103 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 CD1BP29016 333 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 RGS21Q2M5E4 152 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 ZNF660Q6AZW8 331 aaPredicted RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 OR10W1Q8NGF6 305 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FGFBP3Q8TAT2 258 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 SNRNP27Q8WVK2 155 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 OR5P3Q8WZ94 311 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 FRZBQ92765 325 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 RTN4RQ9BZR6 473 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 EIF5A2Q9GZV4 153 aaKnown RBP3.51□□□□□ -1.85
USH2A-202ENST00000366942 PRSS21Q9Y6M0 314 aa3.51□□□□□ -1.85
USH2A-202ENST00000366942 AKAP12Q02952 1782 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 FAM221AA4D161 298 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 LINC01548A6NM66 108 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 J3QL48 77 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 UBE2CO00762 179 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 FRS3O43559 492 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 PDCD6O75340 191 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 HYPMO75409 117 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 CRLF1O75462 422 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 RAB6AP20340 208 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 BCL3P20749 454 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 ERVFC1-1P60608 527 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 ETV3LQ6ZN32 361 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 SLC25A46Q96AG3 418 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 CHCHD5Q9BSY4 110 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 TECRQ9NZ01 308 aaKnown RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 TAPBPO15533 448 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 GZMBP10144 247 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 NAT2P11245 290 aa3.5□□□□□ -1.85
USH2A-202ENST00000366942 ZNF121P58317 390 aaPredicted RBP3.5□□□□□ -1.85
USH2A-202ENST00000366942 HIST1H1AQ02539 215 aaPredicted RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms