RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ARL11Q969Q4 196 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 CABLES2Q9BTV7 478 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 COPZ2Q9P299 210 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 NUBP2Q9Y5Y2 271 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 F5H0A9 414 aaPredicted RBP16.45■□□□□ 0.22
CLN3-205ENST00000359984 NDUFB6O95139 128 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 HBZP02008 142 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 CTXN2P0C2S0 81 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 RPL31P62899 125 aaKnown RBP16.45■□□□□ 0.22
CLN3-205ENST00000359984 DHRS11Q6UWP2 260 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 TMEM17Q86X19 198 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 C10orf105Q8TEF2 133 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 CORO2AQ92828 525 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 MRGPRFQ96AM1 343 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 TMPRSS13Q9BYE2 586 aa16.45■□□□□ 0.22
CLN3-205ENST00000359984 POLQO75417 2590 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 TRGV10A0A0A0MS01 117 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 hADV38S2A0JD32 116 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 MEF2CQ06413 473 aaPredicted RBP16.44■□□□□ 0.22
CLN3-205ENST00000359984 WDR25Q64LD2 544 aaPredicted RBP16.44■□□□□ 0.22
CLN3-205ENST00000359984 CLEC2AQ6UVW9 174 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 BTN2A1Q7KYR7 527 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 LHFPL1Q86WI0 220 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 TERB2Q8NHR7 220 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 RFESDQ8TAC1 157 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 ZNF2Q9BSG1 426 aaPredicted RBP16.44■□□□□ 0.22
CLN3-205ENST00000359984 APCP25054 2843 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 TRBV6-7A0A0A0MS04 114 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 C7orf66A4D0T2 115 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 NFYAP23511 347 aaPredicted RBP16.44■□□□□ 0.22
CLN3-205ENST00000359984 FCGR2CP31995 323 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 CBX3Q13185 183 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 RBMS2Q15434 407 aaKnown RBP16.44■□□□□ 0.22
CLN3-205ENST00000359984 TMEM200BQ69YZ2 307 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 GIMAP1Q8WWP7 306 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 GINS4Q9BRT9 223 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 PIMREGQ9BSJ6 248 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 NUDT15Q9NV35 164 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 BEX4Q9NWD9 120 aaPredicted RBP16.44■□□□□ 0.22
CLN3-205ENST00000359984 CALYQ9NYX4 217 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 OR1A1Q9P1Q5 309 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 CLN8Q9UBY8 286 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 OPN4Q9UHM6 478 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 LINC00312Q9Y6C7 94 aa16.44■□□□□ 0.22
CLN3-205ENST00000359984 TRAV6A0A075B6T7 132 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 NDUFS8O00217 210 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 DNASE1P24855 282 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 IL2RGP31785 369 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 RAG2P55895 527 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 C17orf58Q2M2W7 97 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 AADACL3Q5VUY0 350 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 GALMQ96C23 342 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 SLC23A1Q9UHI7 598 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 FLVCR2Q9UPI3 526 aa16.43■□□□□ 0.22
CLN3-205ENST00000359984 OR5H14A6NHG9 310 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 A8MV72 311 aaPredicted RBP16.42■□□□□ 0.22
CLN3-205ENST00000359984 GPR37O15354 613 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 SPINT2O43291 252 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 ZNF273Q14593 569 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 OR10J5Q8NHC4 309 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 SLC25A21Q9BQT8 299 aaPredicted RBP16.42■□□□□ 0.22
CLN3-205ENST00000359984 C20orf85Q9H1P6 137 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 LPAR3Q9UBY5 353 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 UBE2J1Q9Y385 318 aaPredicted RBP16.42■□□□□ 0.22
CLN3-205ENST00000359984 DSCAML1Q8TD84 2053 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 KBTBD11-OT1A0A1B0GTJ5 212 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 VWC2LB2RUY7 222 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 NPIPB11E5RHQ5 1161 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 DIRAS3O95661 229 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 IGHV2-5P01817 119 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 HEXAP06865 529 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 NPY4RP50391 375 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 RAB25P57735 213 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 RRAS2P62070 204 aaPredicted RBP16.42■□□□□ 0.22
CLN3-205ENST00000359984 DEFB113Q30KQ7 82 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 FAM185AQ8N0U4 392 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 CLDND2Q8NHS1 167 aa16.42■□□□□ 0.22
CLN3-205ENST00000359984 MALRD1Q5VYJ5 2156 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 IGHV4-30-2A0A087WSY4 118 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 TRBV23-1A0A0A0MS06 115 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 ZNF729A6NN14 1252 aaPredicted RBP16.41■□□□□ 0.22
CLN3-205ENST00000359984 PHF1O43189 567 aaPredicted RBP16.41■□□□□ 0.22
CLN3-205ENST00000359984 AADACP22760 399 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 NKX2-5P52952 324 aaPredicted RBP16.41■□□□□ 0.22
CLN3-205ENST00000359984 DSCR9P59020 149 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 LMO4P61968 165 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 GNB2P62879 340 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 FAM53AQ6NSI3 398 aaPredicted RBP16.41■□□□□ 0.22
CLN3-205ENST00000359984 OR52L2PQ8NGH6 319 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 GHITMQ9H3K2 345 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 LINC00574Q9H8X3 128 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 RANGRFQ9HD47 186 aaPredicted RBP16.41■□□□□ 0.22
CLN3-205ENST00000359984 TAS2R3Q9NYW6 316 aa16.41■□□□□ 0.22
CLN3-205ENST00000359984 A0A0A6YYJ9 748 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 ARPC1BO15143 372 aaKnown RBP16.4■□□□□ 0.22
CLN3-205ENST00000359984 HSPA12AO43301 675 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 TUSC2O75896 110 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 DHFRP00374 187 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 H2AFB2P0C5Z0 115 aa16.4■□□□□ 0.22
CLN3-205ENST00000359984 OMGP23515 440 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 421.9 ms