RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 SYNGR2O43760 224 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 HPXP02790 462 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 Q6ZNX1 250 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 HNRNPA3P51991 378 aaKnown RBP13.56□□□□□ -0.24
PTPRF-201ENST00000359947 CENPVQ7Z7K6 275 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-201ENST00000359947 CFHR5Q9BXR6 569 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 TECRQ9NZ01 308 aaKnown RBP13.56□□□□□ -0.24
PTPRF-201ENST00000359947 CTF1Q16619 201 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 ADAT3Q96EY9 351 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-201ENST00000359947 METTL1Q9UBP6 276 aaKnown RBP13.56□□□□□ -0.24
PTPRF-201ENST00000359947 WSB1Q9Y6I7 421 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 FAM186AA6NE01 2351 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 GDF9O60383 454 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 ZNF680Q8NEM1 530 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 CBY1Q9Y3M2 126 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 LOC102724200A0A096LPH7 203 aaPredicted RBP13.56□□□□□ -0.24
PTPRF-201ENST00000359947 CTSBP07858 339 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 TM4SF20Q53R12 229 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 ZPLD1Q8TCW7 415 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 C12orf57Q99622 126 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 PRNDQ9UKY0 176 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 COL8A1P27658 744 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 OR1L8Q8NGR8 309 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 C16orf92Q96LL3 132 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 ZNF426Q9BUY5 554 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 ZNF385DQ9H6B1 395 aa13.56□□□□□ -0.24
PTPRF-201ENST00000359947 PRNTQ86SH4 94 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 FBXL17Q9UF56 701 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 ARHGEF17Q96PE2 2063 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-201ENST00000359947 HOXD4P09016 255 aaPredicted RBP13.55□□□□□ -0.24
PTPRF-201ENST00000359947 ERVS71-1P61550 626 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 EBLN2Q6P2I7 272 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 ZBTB44Q8NCP5 570 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 BVESQ8NE79 360 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 ESPL1Q14674 2120 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 ABCA7Q8IZY2 2146 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 P2RY6Q15077 328 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 LEAP2Q969E1 77 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 RAB29O14966 203 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 FGF5P12034 268 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 GDF15Q99988 308 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 LPAR3Q9UBY5 353 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 OR2W1Q9Y3N9 320 aa13.55□□□□□ -0.24
PTPRF-201ENST00000359947 TEX50A0A1B0GTY4 177 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 MPC2O95563 127 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 SHISA5Q8N114 240 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 HIST1H1EP10412 219 aaKnown RBP13.54□□□□□ -0.24
PTPRF-201ENST00000359947 PLAC1Q9HBJ0 212 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 TMEM229AB2RXF0 380 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 P01737 135 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 HS3ST3B1Q9Y662 390 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 A0A1W2PQM1 296 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 DAOP14920 347 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 TMEM33P57088 247 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 IL13RA2Q14627 380 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 UNQ5815/PRO19632Q6UWF5 114 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 OR4B1Q8NGF8 309 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 GAPDHP04406 335 aaKnown RBP13.54□□□□□ -0.24
PTPRF-201ENST00000359947 XAF1Q6GPH4 301 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 GHITMQ9H3K2 345 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 RAXQ9Y2V3 346 aa13.54□□□□□ -0.24
PTPRF-201ENST00000359947 IGKV1-8A0A0C4DH67 115 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 FAM157CP0CG43 387 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 SLC6A1P30531 599 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 VWA1Q6PCB0 445 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 CD300LDQ6UXZ3 194 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 CDRT15L2A8MXV6 281 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 ADAD2Q8NCV1 583 aaKnown RBP13.53□□□□□ -0.24
PTPRF-201ENST00000359947 NUBP1P53384 320 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 SLC26A10Q8NG04 563 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 ZNF519Q8TB69 540 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 TRAV8-7A0A075B6U6 113 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 FGF9P31371 208 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-201ENST00000359947 RANP62826 216 aaKnown RBP13.53□□□□□ -0.24
PTPRF-201ENST00000359947 SPANXN1Q5VSR9 72 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 CLEC18BQ6UXF7 455 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 PGLYRP3Q96LB9 341 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 AKIP1Q9NQ31 210 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 PHOX2AO14813 284 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 GZMKP49863 264 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 ABHD1Q96SE0 405 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 TMEM127O75204 238 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 SULT1A1P50225 295 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 PDLIM4P50479 330 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 ATP6V1FQ16864 119 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 ZNF841Q6ZN19 808 aa13.53□□□□□ -0.24
PTPRF-201ENST00000359947 FCARP24071 287 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 TCTAP57738 103 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 MPV17LQ2QL34 196 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 U3KQ87 197 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 ZDBF2Q9HCK1 2354 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 MFNGO00587 321 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 STXBP6Q8NFX7 210 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 C10orf35Q96D05 121 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 PARD6AQ9NPB6 346 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 TMEM167BQ9NRX6 74 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 AURKAIP1Q9NWT8 199 aaPredicted RBP13.52□□□□□ -0.24
PTPRF-201ENST00000359947 BRWD3Q6RI45 1802 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 TRAV34A0A0B4J273 112 aa13.52□□□□□ -0.24
PTPRF-201ENST00000359947 NKX2-6A6NCS4 301 aa13.52□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms