RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 TPBGQ13641 420 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 ABCA11PQ4W5N1 156 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 HSD17B12Q53GQ0 312 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 ARSJQ5FYB0 599 aaPredicted RBP14.66□□□□□ -0.06
CLN3-202ENST00000355477 OR52M1Q8NGK5 317 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 OR56B4Q8NH76 319 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 UFD1Q92890 307 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 CCDC90BQ9GZT6 254 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 VCX3BQ9H321 246 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 KCNK15Q9H427 330 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 GFOD1Q9NXC2 390 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 GHRLQ9UBU3 117 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 TRAPPC2LQ9UL33 140 aa14.66□□□□□ -0.06
CLN3-202ENST00000355477 C12orf77C9JDV5 145 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 MPIG6BO95866 241 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 SNRNP70P08621 437 aaKnown RBP14.65□□□□□ -0.06
CLN3-202ENST00000355477 VSIG8P0DPA2 414 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 RCC1P18754 421 aaPredicted RBP14.65□□□□□ -0.06
CLN3-202ENST00000355477 RPS25P62851 125 aaKnown RBP14.65□□□□□ -0.06
CLN3-202ENST00000355477 GLT8D1Q68CQ7 371 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 PRSS48Q7RTY5 328 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 C5orf24Q7Z6I8 188 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 THNSL2Q86YJ6 484 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 OR10X1Q8NGY0 326 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 AKR1E2Q96JD6 320 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 CNBD2Q96M20 576 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 ISYNA1Q9NPH2 558 aa14.65□□□□□ -0.06
CLN3-202ENST00000355477 PEX14O75381 377 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 GLAP06280 429 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 LPLP06858 475 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 FAM106CPP0CH98 169 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 CPEP16870 476 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 RAB7AP51149 207 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 NSUN5P1Q3KNT7 163 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 LINC00311Q8N616 119 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 OR1L1Q8NH94 360 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 GFI1Q99684 422 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 CITED2Q99967 270 aaPredicted RBP14.64□□□□□ -0.07
CLN3-202ENST00000355477 CST11Q9H112 138 aa14.64□□□□□ -0.07
CLN3-202ENST00000355477 ADARB2-AS1A8MUL3 147 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 SLC22A1O15245 554 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 SLC31A2O15432 143 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 PDCD6O75340 191 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 HBZP02008 142 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 UBBP0CG47 229 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 REG1BP48304 166 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 HSPA13P48723 471 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 ZNF134P52741 427 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 QRFPP83859 136 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 MLLT11Q13015 90 aaPredicted RBP14.63□□□□□ -0.07
CLN3-202ENST00000355477 UNC119Q13432 240 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 OR8H3Q8N146 312 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 PRR18Q8N4B5 295 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 C8orf31Q8N9H6 132 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 MGLLQ99685 303 aa14.63□□□□□ -0.07
CLN3-202ENST00000355477 CCRL2O00421 344 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 HSD17B6O14756 317 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 SPINT2O43291 252 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 CA11O75493 328 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 CHATP28329 748 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 HTR2CP28335 458 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 RPS27AP62979 156 aaKnown RBP14.62□□□□□ -0.07
CLN3-202ENST00000355477 ZNF816Q0VGE8 651 aaPredicted RBP14.62□□□□□ -0.07
CLN3-202ENST00000355477 HNF4GQ14541 408 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 NKAPLQ5M9Q1 402 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 C6orf183Q5T699 404 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 ZNF439Q8NDP4 499 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 OR5AU1Q8NGC0 362 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 OR10V1Q8NGI7 309 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 MRPL30Q8TCC3 161 aaKnown RBP14.62□□□□□ -0.07
CLN3-202ENST00000355477 ST6GALNAC6Q969X2 333 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 SULT4A1Q9BR01 284 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 NICN1Q9BSH3 213 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 FAAP24Q9BTP7 215 aa14.62□□□□□ -0.07
CLN3-202ENST00000355477 IGHV1-3A0A0C4DH29 117 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 ATP6V1G2O95670 118 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 IGKV1D-33P01593 117 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 IGKV1-33P01594 117 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 GAPDHP04406 335 aaKnown RBP14.61□□□□□ -0.07
CLN3-202ENST00000355477 FABP5Q01469 135 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 HES1Q14469 280 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 TRAM1Q15629 374 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 CT45A1Q5HYN5 189 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 C9orf152Q5JTZ5 239 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 C6orf201Q7Z4U5 140 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 MOB3BQ86TA1 216 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 C1QL4Q86Z23 238 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 CT45A3Q8NHU0 189 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 KCNG3Q8TAE7 436 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 TMEM59Q9BXS4 323 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 TAF9BQ9HBM6 251 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 MBNL3Q9NUK0 354 aaKnown RBP14.61□□□□□ -0.07
CLN3-202ENST00000355477 RAB26Q9ULW5 256 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 MOB4Q9Y3A3 225 aa14.61□□□□□ -0.07
CLN3-202ENST00000355477 AK6Q9Y3D8 172 aaKnown RBP14.61□□□□□ -0.07
CLN3-202ENST00000355477 PRKDCP78527 4128 aaKnown RBP14.6□□□□□ -0.07
CLN3-202ENST00000355477 A0A0A6YYD4 124 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 IGHV3-72A0A0B4J1Y9 119 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 TMEM14DPA8MWL7 114 aa14.6□□□□□ -0.07
CLN3-202ENST00000355477 M0QZK8 103 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 117.2 ms