RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TRAV40A0A0B4J280 105 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 A6NHS1 94 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 ZNF729A6NN14 1252 aaPredicted RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 XRCC3O43542 346 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 CLPXO76031 633 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 GSTP1P09211 210 aaKnown RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 RCC1P18754 421 aaPredicted RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 OMGP23515 440 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 SSTR5P35346 364 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 TAS2R20P59543 309 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 ERVFRD-1P60508 538 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 KLRD1Q13241 179 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 FAM120AOSQ5T036 256 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 LAX1Q8IWV1 398 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 PDZD9Q8IXQ8 264 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 RFESDQ8TAC1 157 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 NUDCD2Q8WVJ2 157 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 CORO2AQ92828 525 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 LHX4Q969G2 390 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 ARL11Q969Q4 196 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 DMRTB1Q96MA1 342 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 CMTM3Q96MX0 182 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 RIMS4Q9H426 269 aaPredicted RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 NCOR1P1Q9H4R4 102 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 METTL8Q9H825 291 aaKnown RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 EXTL2Q9UBQ6 330 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 OPN4Q9UHM6 478 aa12.29□□□□□ -0.44
NUP54-213ENST00000513352 ELF5Q9UKW6 265 aaPredicted RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 ZNF469Q96JG9 3925 aaPredicted RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 KBTBD11-OT1A0A1B0GTJ5 212 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 AVPP01185 164 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 MMP9P14780 707 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 GZMHP20718 246 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 COX7A1P24310 79 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 NFYBP25208 207 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 DLX6P56179 175 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 ZNF260Q3ZCT1 412 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 HACD4Q5VWC8 232 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 TRAT1Q6PIZ9 186 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 MOB1BQ7L9L4 216 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 Q8N7P7 452 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 TBX15Q96SF7 602 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 MIXL1Q9H2W2 232 aa12.28□□□□□ -0.44
NUP54-213ENST00000513352 A0A1W2PRD5 423 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 A0A1W2PRF3 423 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 A0A1W2PRM7 423 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 FAM172BPA6NC97 362 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 C17orf98A8MV24 154 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 INAFM1C9JVW0 142 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 SPINT2O43291 252 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 NAPSAO96009 420 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 FCGR3AP08637 254 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 IGHV1-8P0DP01 117 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 PTHLHP12272 177 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 HOXB4P17483 251 aaPredicted RBP12.27□□□□□ -0.45
NUP54-213ENST00000513352 PNLIPRP3Q17RR3 467 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 GPR157Q5UAW9 335 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 CNIH2Q6PI25 160 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 C1orf229Q6ZS94 237 aaPredicted RBP12.27□□□□□ -0.45
NUP54-213ENST00000513352 SNX29P2Q8IUI4 249 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 TEX29Q8N6K0 151 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 NANPQ8TBE9 248 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 MAFIPQ8WZ33 124 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 UPRTQ96BW1 309 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 DIRAS2Q96HU8 199 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 SUCNR1Q9BXA5 334 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 BEX2Q9BXY8 128 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 AUNIPQ9H7T9 357 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 TAF9BQ9HBM6 251 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 RAB9BQ9NP90 201 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.27□□□□□ -0.45
NUP54-213ENST00000513352 IDI2-AS1Q9NZ38 188 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 SESN1Q9Y6P5 492 aa12.27□□□□□ -0.45
NUP54-213ENST00000513352 C12orf77C9JDV5 145 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 MMP23AO75900 390 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 HBZP02008 142 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 RBP4P02753 201 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 PRTN3P24158 256 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 S100A5P33763 92 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 PITPNAQ00169 270 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 C17orf58Q2M2W7 97 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 NCR3LG1Q68D85 454 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 HEPN1Q6WQI6 88 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 C1orf122Q6ZSJ8 110 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 GAPTQ8N292 157 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 OR1L1Q8NH94 360 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 GCDHQ92947 438 aaPredicted RBP12.26□□□□□ -0.45
NUP54-213ENST00000513352 ST6GALNAC5Q9BVH7 336 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 NXF2Q9GZY0 626 aaKnown RBP12.26□□□□□ -0.45
NUP54-213ENST00000513352 MMP27Q9H306 513 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 HEXA-AS1Q9H8Q6 139 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 Q9N2K0 584 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 MBNL3Q9NUK0 354 aaKnown RBP12.26□□□□□ -0.45
NUP54-213ENST00000513352 TMEM160Q9NX00 188 aa12.26□□□□□ -0.45
NUP54-213ENST00000513352 ZNF230Q9UIE0 474 aaPredicted RBP12.26□□□□□ -0.45
NUP54-213ENST00000513352 IGHV3-43A0A0B4J1X8 118 aa12.25□□□□□ -0.45
NUP54-213ENST00000513352 MEIS3P1A6NDR6 274 aa12.25□□□□□ -0.45
NUP54-213ENST00000513352 SDCBPO00560 298 aaPredicted RBP12.25□□□□□ -0.45
NUP54-213ENST00000513352 ORC5O43913 435 aa12.25□□□□□ -0.45
NUP54-213ENST00000513352 FCER2P06734 321 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms