RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RIPK1Q13546 671 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 OR13C5Q8NGS8 318 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 GHSRQ92847 366 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 ORAI1Q96D31 301 aa13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 RCC1LQ96I51 464 aaKnown RBP13.14□□□□□ -0.31
CCDC28B-204ENST00000469003 A0A1W2PPE3 182 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 C15orf65H3BRN8 121 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 GPX5O75715 221 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 CLIC3O95833 236 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 IGKV1D-33P01593 117 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 IGKV1-33P01594 117 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 MED21Q13503 144 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 HNF4GQ14541 408 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 ATAD3CQ5T2N8 411 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 TTC23Q5W5X9 447 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 DMKNQ6E0U4 476 aaPredicted RBP13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 OR52M1Q8NGK5 317 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 TMEM80Q96HE8 168 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 ZNF184Q99676 751 aaPredicted RBP13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 CHCHD3Q9NX63 227 aaKnown RBP13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 CLEC2DQ9UHP7 191 aa13.13□□□□□ -0.31
CCDC28B-204ENST00000469003 HSD17B6O14756 317 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 DUS4LO95620 317 aaKnown RBP13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 GAPDHP04406 335 aaKnown RBP13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 GTF2F2P13984 249 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 RPS11P62280 158 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 EBI3Q14213 229 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 GPR176Q14439 515 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 Q499Y3 187 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 SLC22A6Q4U2R8 563 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 YIF1BQ5BJH7 314 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 ZNF329Q86UD4 541 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 LINC00311Q8N616 119 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 SETD9Q8NE22 299 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 NEK7Q8TDX7 302 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 CHPT1Q8WUD6 406 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 CYGBQ8WWM9 190 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 ARL11Q969Q4 196 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 CKLFQ9UBR5 152 aa13.12□□□□□ -0.31
CCDC28B-204ENST00000469003 IGHV1-3A0A0C4DH29 117 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 A0A1W2PP11 408 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 MAGEA13PA6NCF6 341 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 SDCBPO00560 298 aaPredicted RBP13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 ORC5O43913 435 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 FSTP19883 344 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 ZNF497Q6ZNH5 498 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 MOB3BQ86TA1 216 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 ZFP41Q8N8Y5 198 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 C8orf31Q8N9H6 132 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 ZNF485Q8NCK3 441 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 CCDC107Q8WV48 283 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 PGLYRP3Q96LB9 341 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 NOL4LQ96MY1 436 aaPredicted RBP13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 C8orf4Q9NR00 106 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 GFOD1Q9NXC2 390 aa13.11□□□□□ -0.31
CCDC28B-204ENST00000469003 TRAV8-7A0A075B6U6 113 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 TRBV5-7A0A0A0MS05 114 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 SERPINE3A8MV23 424 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 AIPO00170 330 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 CCRL2O00421 344 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 IGHG2P01859 326 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 MT-ND4P03905 459 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 RPL23AP62750 156 aaKnown RBP13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 ADARB1P78563 741 aaKnown RBP13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 Q3ZCU0 254 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 SLC35E3Q7Z769 313 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 IZUMO1Q8IYV9 350 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 STX19Q8N4C7 294 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 PACRGLQ8N7B6 248 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 LINC00482Q8N8I6 264 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 OR51D1Q8NGF3 324 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 GGHQ92820 318 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 MRPS24Q96EL2 167 aaKnown RBP13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 EAF1Q96JC9 268 aaPredicted RBP13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 SPACA1Q9HBV2 294 aa13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 RCC2Q9P258 522 aaKnown RBP13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 MRPS28Q9Y2Q9 187 aaKnown RBP13.1□□□□□ -0.31
CCDC28B-204ENST00000469003 MPIG6BO95866 241 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 IL3RAP26951 378 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 REG1BP48304 166 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 TAS2R43P59537 309 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 ST3GAL4Q11206 333 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 LRRC36Q1X8D7 754 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 GLIPR1L1Q6UWM5 242 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 ETV3LQ6ZN32 361 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 FOXRED2Q8IWF2 684 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 CDH26Q8IXH8 852 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 DHRSXQ8N5I4 330 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 COMMD1Q8N668 190 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 Q8N6K4 173 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 UBALD1Q8TB05 177 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 MUL1Q969V5 352 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 ST6GALNAC6Q969X2 333 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 ZFP57Q9NU63 452 aa13.09□□□□□ -0.31
CCDC28B-204ENST00000469003 IGHV3-43A0A0B4J1X8 118 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 IGHV3-72A0A0B4J1Y9 119 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 MCRIP1C9JLW8 97 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 IGHV3-43DP0DP04 118 aa13.08□□□□□ -0.32
CCDC28B-204ENST00000469003 SLC6A1P30531 599 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms