RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 SF3B5Q9BWJ5 86 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 TRPM6Q9BX84 2022 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 CRYM-AS1A6NIL9 109 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 SMAD4Q13485 552 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 OR1C1Q15619 314 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 C2orf68Q2NKX9 166 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 MRPL54Q6P161 138 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 OR4P4Q8NGL7 312 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 BLNKQ8WV28 456 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 IP6K3Q96PC2 410 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 HSD17B10Q99714 261 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 NEUROG3Q9Y4Z2 214 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 CCDC88CQ9P219 2028 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 CXorf65A6NEN9 183 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 PPP1CCP36873 323 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 EIF3IQ13347 325 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 LINC01590Q5TEZ4 76 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 SSMEM1Q8WWF3 244 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 OR2H1Q9GZK4 316 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 NAGKQ9UJ70 344 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 KLF4O43474 513 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 PSG5Q15238 335 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 SARGQ9BW04 601 aa13.91□□□□□ -0.18
COL17A1-202ENST00000369733 TECRQ9NZ01 308 aaKnown RBP13.91□□□□□ -0.18
COL17A1-202ENST00000369733 SPRY3O43610 288 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 MOSPD3O75425 235 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 THY1P04216 161 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 G6PCP35575 357 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 RAB7AP51149 207 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SERF2P84101 59 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 RSG1Q9BU20 258 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SLC2A8Q9NY64 477 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 ATP23Q9Y6H3 246 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 COL11A1P12107 1806 aaPredicted RBP13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SRSF10O75494 262 aaKnown RBP13.9□□□□□ -0.18
COL17A1-202ENST00000369733 ADRA2AP08913 450 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 UBE2L3P68036 154 aaKnown RBP13.9□□□□□ -0.18
COL17A1-202ENST00000369733 TMEM191AQ9H0A3 160 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SH3BGRL3Q9H299 93 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 DANCRP0C864 163 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 RBM11P57052 281 aaKnown RBP13.9□□□□□ -0.18
COL17A1-202ENST00000369733 OR4A4PQ8NGN8 299 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SRD5A3Q9H8P0 318 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 FZR1Q9UM11 496 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 F5P12259 2224 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SP1P08047 785 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 SRP14P37108 136 aaKnown RBP13.9□□□□□ -0.18
COL17A1-202ENST00000369733 B2MP61769 119 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 RPL11P62913 178 aaKnown RBP13.9□□□□□ -0.18
COL17A1-202ENST00000369733 HIST3H3Q16695 136 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 VMA21Q3ZAQ7 101 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 COL5A1-AS1Q5SY13 56 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 GOLT1BQ9Y3E0 138 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 NPTNQ9Y639 398 aa13.9□□□□□ -0.18
COL17A1-202ENST00000369733 COL4A5P29400 1685 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 NPIPB9F8W1W9 429 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 RND3P61587 244 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 CADM4Q8NFZ8 388 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 TMEM230Q96A57 120 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 UCN2Q96RP3 112 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 TUBD1Q9UJT1 453 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 DIRC3C9JPN6 131 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 ABLIM2Q6H8Q1 611 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 SGMS2Q8NHU3 365 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 SOSTQ9BQB4 213 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 OR1A1Q9P1Q5 309 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 PILRAQ9UKJ1 303 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 ARID2Q68CP9 1835 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 IL2RAP01589 272 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 IGHV3-13P01766 116 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 IGHV3-7P01780 117 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 F2RP25116 425 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 FNDC7Q5VTL7 733 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 ZNF519Q8TB69 540 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 PCGF1Q9BSM1 259 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 TMEM222Q9H0R3 208 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 PLA2G3Q9NZ20 509 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 A0A1B0GV90 55 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 ZNF665Q9H7R5 613 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 GSN-AS1Q9NRJ2 163 aa13.89□□□□□ -0.19
COL17A1-202ENST00000369733 RBBP6Q7Z6E9 1792 aaKnown RBP13.89□□□□□ -0.19
COL17A1-202ENST00000369733 GREB1LQ9C091 1923 aaPredicted RBP13.89□□□□□ -0.19
COL17A1-202ENST00000369733 TRAV39A0A0B4J263 110 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 PAFAH1B2P68402 229 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 MESP2Q0VG99 397 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 HYAL1Q12794 435 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 IL11RAQ14626 422 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 SPNS3Q6ZMD2 512 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 POC1AQ8NBT0 407 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 APCDD1LQ8NCL9 501 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 MISP3Q96FF7 219 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 TRIP12Q14669 1992 aaPredicted RBP13.88□□□□□ -0.19
COL17A1-202ENST00000369733 CXorf1O96002 111 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 TGIF1Q15583 401 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 ACER2Q5QJU3 275 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 NR2C2APQ86WQ0 139 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 OR1L4Q8NGR5 311 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 LRRC29Q8WV35 223 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 PCED1AQ9H1Q7 454 aa13.88□□□□□ -0.19
COL17A1-202ENST00000369733 A0A0U1RQV5 110 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms