RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PTPN13Q12923 2485 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 ODAMA1E959 279 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 SDCBPO00560 298 aaPredicted RBP16.51■□□□□ 0.23
CLN3-205ENST00000359984 NDUFB3O43676 98 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 CCNKO75909 580 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 AMY2AP04746 511 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 PAX1P15863 534 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 CDK10Q15131 360 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 VAX1Q5SQQ9 334 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 ZNF782Q6ZMW2 699 aaPredicted RBP16.51■□□□□ 0.23
CLN3-205ENST00000359984 OR51S1Q8NGJ8 323 aa16.51■□□□□ 0.23
CLN3-205ENST00000359984 FASNP49327 2511 aaKnown RBP16.51■□□□□ 0.23
CLN3-205ENST00000359984 KIR2DS1A0A191URI9 304 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 DVL1O14640 695 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 FABP7O15540 132 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 NDUFB7P17568 137 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 KIR2DS4P43632 304 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 HLA-DRB3P79483 266 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 KIR2DS1Q14954 304 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 TATDN3Q17R31 274 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 LRRC10Q5BKY1 277 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 OVCH2Q7RTZ1 564 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 OR13A1Q8NGR1 328 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 CREB3L1Q96BA8 519 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 ST6GAL2Q96JF0 529 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 NCOR1P1Q9H4R4 102 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 BARX1Q9HBU1 254 aaPredicted RBP16.5■□□□□ 0.23
CLN3-205ENST00000359984 EHFQ9NZC4 300 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 MEX3AA1L020 520 aaKnown RBP16.5■□□□□ 0.23
CLN3-205ENST00000359984 IFNA6P05013 189 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 IGSF11Q5DX21 431 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 MRGPRDQ8TDS7 321 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 PERPQ96FX8 193 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 MGAT4AQ9UM21 535 aa16.5■□□□□ 0.23
CLN3-205ENST00000359984 DISC1C4P0D8 188 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 PDLIM4P50479 330 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 HMGN3Q15651 99 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 SPICQ8N5J4 248 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 GSX2Q9BZM3 304 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 DPAGT1Q9H3H5 408 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 TAF9BQ9HBM6 251 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 NECAP2Q9NVZ3 263 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 ALG5Q9Y673 324 aa16.49■□□□□ 0.23
CLN3-205ENST00000359984 IGKV1-6A0A0C4DH72 117 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 INMT-MINDY4F8WBC2 141 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 OR5H8P0DN80 308 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 RPS2P15880 293 aaKnown RBP16.48■□□□□ 0.23
CLN3-205ENST00000359984 SEC61A1P61619 476 aaKnown RBP16.48■□□□□ 0.23
CLN3-205ENST00000359984 HERPUD1Q15011 391 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 ZNF841Q6ZN19 808 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 UBALD1Q8TB05 177 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 LURAP1Q96LR2 239 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 NARFLQ9H6Q4 476 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 KCNIP1Q9NZI2 227 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 MIOXQ9UGB7 285 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 C12orf77C9JDV5 145 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 WNT2P09544 360 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 GLP1RP43220 463 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 CR1LQ2VPA4 569 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 C6orf183Q5T699 404 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 PRR18Q8N4B5 295 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 ARRDC1Q8N5I2 433 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 OR4A4PQ8NGN8 299 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 SLC2A8Q9NY64 477 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 PCDHB10Q9UN67 800 aa16.48■□□□□ 0.23
CLN3-205ENST00000359984 TSPAN5P62079 268 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 SCGB2B2Q4G0G5 96 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 ZNF565Q8N9K5 539 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 ZBTB8BQ8NAP8 495 aaPredicted RBP16.47■□□□□ 0.23
CLN3-205ENST00000359984 NEIL1Q96FI4 390 aaPredicted RBP16.47■□□□□ 0.23
CLN3-205ENST00000359984 KIRREL1Q96J84 757 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 BPESC1Q9GZL8 116 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 PATZ1Q9HBE1 687 aaKnown RBP16.47■□□□□ 0.23
CLN3-205ENST00000359984 C19orf12Q9NSK7 152 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 OR6C3Q9NZP0 311 aa16.47■□□□□ 0.23
CLN3-205ENST00000359984 TCRBP04435 133 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 IDO2Q6ZQW0 420 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 TCF23Q7RTU1 214 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 OR8B3Q8NGG8 313 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 OR1L1Q8NH94 360 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 OR8B2Q96RD0 313 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 PRRT1Q99946 306 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 SCP2D1Q9UJQ7 156 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 ZNF221Q9UK13 617 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 ABCA12Q86UK0 2595 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 ARID1AO14497 2285 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 KIAA2026Q5HYC2 2103 aa16.46■□□□□ 0.23
CLN3-205ENST00000359984 C15orf65H3BRN8 121 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 BET1O15155 118 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 CGB3P0DN86 165 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 CGB7P0DN87 165 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 GZMHP20718 246 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 SSTR5P35346 364 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 ZNF660Q6AZW8 331 aaPredicted RBP16.46■□□□□ 0.22
CLN3-205ENST00000359984 TRAT1Q6PIZ9 186 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 NLRC3Q7RTR2 1065 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 OR13C8Q8NGS7 320 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 IL1F10Q8WWZ1 152 aa16.46■□□□□ 0.22
CLN3-205ENST00000359984 H1FXQ92522 213 aaKnown RBP16.46■□□□□ 0.22
CLN3-205ENST00000359984 FAM168AQ92567 244 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms