RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 STARD4Q96DR4 205 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 PRRX2Q99811 253 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 SMIM3Q9BZL3 60 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 CCL28Q9NRJ3 127 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 PLSCR4Q9NRQ2 329 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 H7C1Q1 480 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 TNFSF12O43508 249 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 NXPH2O95156 264 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 CECR9P0C854 216 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 KCNJ3P48549 501 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 RTP5Q14D33 572 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 RPL7L1Q6DKI1 246 aaKnown RBP13.86□□□□□ -0.19
COL4A1-204ENST00000543140 SEM1Q6ZVN7 128 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 HSD17B13Q7Z5P4 300 aaPredicted RBP13.86□□□□□ -0.19
COL4A1-204ENST00000543140 STPG2Q8N412 459 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 LRTM2Q8N967 370 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 KIRREL1Q96J84 757 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 ASF1BQ9NVP2 202 aa13.86□□□□□ -0.19
COL4A1-204ENST00000543140 UBE2J1Q9Y385 318 aaPredicted RBP13.86□□□□□ -0.19
COL4A1-204ENST00000543140 ANKRD11Q6UB99 2663 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-204ENST00000543140 CADP27708 2225 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 IQCF6A8MYZ5 107 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 OR2H2O95918 312 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 FABP6P51161 128 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 PXDC1Q5TGL8 231 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 OR1S2Q8NGQ3 325 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 RIMS4Q9H426 269 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-204ENST00000543140 FBXO9Q9UK97 447 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-204ENST00000543140 PROCRQ9UNN8 238 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 A0A1B0GW55 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4L2P0CJ85 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4L3P0CJ86 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4L4P0CJ87 422 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4L5P0CJ88 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4L6P0CJ89 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4L7P0CJ90 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 CEBPDP49716 269 aaPredicted RBP13.85□□□□□ -0.19
COL4A1-204ENST00000543140 NAAAQ02083 359 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 PCSK4Q6UW60 755 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF826PQ6ZT77 177 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 DUX4Q9UBX2 424 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 PCDHB10Q9UN67 800 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 POLDIP2Q9Y2S7 368 aa13.85□□□□□ -0.19
COL4A1-204ENST00000543140 GPR31O00270 319 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 SIGLEC5O15389 551 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 MLNRO43193 412 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 TUSC2O75896 110 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 LDLRAD3Q86YD5 345 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 RPRMLQ8N4K4 120 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 PLPPR1Q8TBJ4 325 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 GTF3AQ92664 365 aaKnown RBP13.84□□□□□ -0.19
COL4A1-204ENST00000543140 NRIP2Q9BQI9 281 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 TMEM222Q9H0R3 208 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 TMEM100Q9NV29 134 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 OR14J1Q9UGF5 321 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 CACNA1DQ01668 2161 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 SLC33A1O00400 549 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-204ENST00000543140 ERVK11-1P61568 191 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 OR10J5Q8NHC4 309 aa13.84□□□□□ -0.19
COL4A1-204ENST00000543140 USB1Q9BQ65 265 aaKnown RBP13.84□□□□□ -0.19
COL4A1-204ENST00000543140 ZNF71Q9NQZ8 489 aaPredicted RBP13.84□□□□□ -0.19
COL4A1-204ENST00000543140 NKX2-6A6NCS4 301 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 KRBOX1C9JBD0 128 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 CTXN2P0C2S0 81 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 PGA5P0DJD9 388 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 HOXB1P14653 301 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 TMEM33P57088 247 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 C1orf162Q8NEQ5 155 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 MS4A7Q9GZW8 240 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 MSL2Q9HCI7 577 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 OR1A1Q9P1Q5 309 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 FBXL17Q9UF56 701 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 PURGQ9UJV8 347 aaKnown RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 ACACAQ13085 2346 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 WNT9BO14905 357 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 CGAP01215 116 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 NBL1P41271 181 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 HLA-DRB3P79483 266 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 IGFL3Q6UXB1 125 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 ZNF695Q8IW36 515 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 FAM185AQ8N0U4 392 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 EIF4E3Q8N5X7 224 aaKnown RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 BSCL2Q96G97 398 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 TAF9BQ9HBM6 251 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 ERRFI1Q9UJM3 462 aaPredicted RBP13.83□□□□□ -0.2
COL4A1-204ENST00000543140 NUP50Q9UKX7 468 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 AMDHD2Q9Y303 409 aa13.83□□□□□ -0.2
COL4A1-204ENST00000543140 ATMQ13315 3056 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 TIMM8AO60220 97 aaPredicted RBP13.82□□□□□ -0.2
COL4A1-204ENST00000543140 BHLHA15Q7RTS1 189 aaPredicted RBP13.82□□□□□ -0.2
COL4A1-204ENST00000543140 Q8IYB0 196 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 OR8G5Q8NG78 346 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 OR4A4PQ8NGN8 299 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 ERGIC1Q969X5 290 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 IFT22Q9H7X7 185 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 UFSP2Q9NUQ7 469 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 TRAPPC2LQ9UL33 140 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 PIEZO2Q9H5I5 2752 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 TRBV6-6A0A0A6YYG2 114 aa13.82□□□□□ -0.2
COL4A1-204ENST00000543140 A6NLC8 198 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms