RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 OR8B4Q96RC9 309 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 OR51I2Q9H344 312 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 GAL3ST2Q9H3Q3 398 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 NRIP3Q9NQ35 241 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 NDUFB11Q9NX14 153 aa7.07□□□□□ -1.28
USP28-205ENST00000537706 MEX3AA1L020 520 aaKnown RBP7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A18PA6NE21 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A16PA6NEW6 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A20PA6NIJ5 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A9PA6NNJ1 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A12PA8MX19 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A5PA8MXJ8 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 ZNF732B4DXR9 585 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 BUB1B-PAK6H3BSN5 160 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 NDUFB8O95169 186 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A15PP0C7V4 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A13PP0C7W8 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A14PP0C7W9 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FAM90A24PP0C7X0 464 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 CDKN2AP42771 156 aaKnown RBP7.06□□□□□ -1.28
USP28-205ENST00000537706 CX3CR1P49238 355 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 ZP1P60852 638 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FHL1Q13642 323 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 RBM39Q14498 530 aaKnown RBP7.06□□□□□ -1.28
USP28-205ENST00000537706 HNF4GQ14541 408 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 SSX1Q16384 188 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 AADACL4Q5VUY2 407 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 NXNL2Q5VZ03 156 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 HAGHLQ6PII5 290 aaPredicted RBP7.06□□□□□ -1.28
USP28-205ENST00000537706 DPY19L2P2Q6ZN68 376 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 ZBTB46Q86UZ6 589 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 GID4Q8IVV7 300 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 MFSD4AQ8N468 514 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 AQP3Q92482 292 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 OR5B12Q96R08 314 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 NABP2Q9BQ15 211 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 OR51E2Q9H255 320 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 OR52D1Q9H346 318 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 FN3KQ9H479 309 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 GNB4Q9HAV0 340 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 PLEKHA1Q9HB21 404 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 LIN7CQ9NUP9 197 aaKnown RBP7.06□□□□□ -1.28
USP28-205ENST00000537706 CLEC2DQ9UHP7 191 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 SLC22A13Q9Y226 551 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 POLDIP2Q9Y2S7 368 aa7.06□□□□□ -1.28
USP28-205ENST00000537706 EXOSC1Q9Y3B2 195 aaKnown RBP7.06□□□□□ -1.28
USP28-205ENST00000537706 LOC100506127A0A0U1RQW1 187 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 METTL15A6NJ78 407 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 NCBP2LA6PVI3 153 aaKnown RBP7.05□□□□□ -1.28
USP28-205ENST00000537706 ZNF878C9JN71 531 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 TXNDC12O95881 172 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 PSMB8P28062 276 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 TGFBR1P36897 503 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 SLURP1P55000 103 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 FXYD6P3P58550 94 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 GNB1P62873 340 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 EDDM3AQ14507 147 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 HLA-DRB5Q30154 266 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 ZNF491Q8N8L2 437 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 MCFD2Q8NI22 146 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 FLYWCH2Q96CP2 140 aaKnown RBP7.05□□□□□ -1.28
USP28-205ENST00000537706 PGAM5Q96HS1 289 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 GPX7Q96SL4 187 aaPredicted RBP7.05□□□□□ -1.28
USP28-205ENST00000537706 CENPOQ9BU64 300 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 JAM3Q9BX67 310 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 NXF2Q9GZY0 626 aaKnown RBP7.05□□□□□ -1.28
USP28-205ENST00000537706 ABCG5Q9H222 651 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 ING3Q9NXR8 418 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 BAIAP2Q9UQB8 552 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 A0A1B0GVY2 172 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 OR5B21A6NL26 309 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 J3QRK9 145 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 DCTN6O00399 190 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 IGLV1-51P01701 117 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 IGHA1P01876 353 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 HTR1FP30939 366 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 ETV1P50549 477 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 WNT4P56705 351 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 FAM57BQ71RH2 274 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 DCXRQ7Z4W1 244 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 TGIF2LXQ8IUE1 241 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 OR56B4Q8NH76 319 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 HPSE2Q8WWQ2 592 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 RGP1Q92546 391 aaPredicted RBP7.05□□□□□ -1.28
USP28-205ENST00000537706 SLAMF6Q96DU3 332 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 KCTD7Q96MP8 289 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 RASL11BQ9BPW5 248 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 RPRD1BQ9NQG5 326 aaKnown RBP7.05□□□□□ -1.28
USP28-205ENST00000537706 SIGLEC7Q9Y286 467 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 MUC4Q99102 2169 aa7.05□□□□□ -1.28
USP28-205ENST00000537706 FAM183AA6NL82 134 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 SHOXO15266 292 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 TPPPO94811 219 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 CPEP16870 476 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 PSMA1P25786 263 aaKnown RBP7.04□□□□□ -1.28
USP28-205ENST00000537706 TMED1Q13445 227 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 CEACAM21Q3KPI0 293 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 LCN12Q6JVE5 192 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 CATSPERDQ86XM0 798 aa7.04□□□□□ -1.28
USP28-205ENST00000537706 OR8H2Q8N162 312 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms