RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TRAV17A0A0B4J275 112 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 NKX2-6A6NCS4 301 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 AQP7O14520 342 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 SMPD2O60906 423 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 FBXO24O75426 580 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 SLC25A6P12236 298 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 FIP1L1Q6UN15 594 aaKnown RBP12.65□□□□□ -0.38
NUP54-217ENST00000514987 H1FOOQ8IZA3 346 aaPredicted RBP12.65□□□□□ -0.38
NUP54-217ENST00000514987 C1orf162Q8NEQ5 155 aaPredicted RBP12.65□□□□□ -0.38
NUP54-217ENST00000514987 DMBX1Q8NFW5 382 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 ERGIC1Q969X5 290 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 SMIM3Q9BZL3 60 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 PLEKHF2Q9H8W4 249 aa12.65□□□□□ -0.38
NUP54-217ENST00000514987 IGKV1-6A0A0C4DH72 117 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 IQCF6A8MYZ5 107 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 RNASEK-C17orf49H0YIS7 233 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 HSPB6O14558 160 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 HS3ST1O14792 307 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 LILRA1O75019 489 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 DANCRP0C864 163 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 GLI4P10075 376 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 SPP1P10451 314 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ZNF44P15621 663 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 IGHV1-2P23083 117 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 DVL1P1P54792 670 aaPredicted RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 VAMP2P63027 116 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ZNF266Q14584 549 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 HMGN3Q15651 99 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ZNF324BQ6AW86 544 aaPredicted RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 Q6P435 159 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 IGF2-ASQ6U949 168 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 PCSK4Q6UW60 755 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 Q6ZRG5 221 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 TMPRSS7Q7RTY8 843 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 OR2C3Q8N628 320 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 SUMF1Q8NBK3 374 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 RDH5Q92781 318 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 USB1Q9BQ65 265 aaKnown RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 NRIP2Q9BQI9 281 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 C11orf1Q9H5F2 150 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 CCL28Q9NRJ3 127 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 PURGQ9UJV8 347 aaKnown RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 DNAJC13O75165 2243 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 KNTC1P50748 2209 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 IGKV1D-13A0A0B4J2D9 117 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 TRIM77I1YAP6 450 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 HSD17B6O14756 317 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 SH2D1BO14796 132 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ZNHIT1O43257 154 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 PGLYRP1O75594 196 aaPredicted RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 CD5P06127 495 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 FTH1P19P0C7X4 201 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 IGKV1-13P0DP09 117 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 CBR1P16152 277 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 CCL11P51671 97 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 NUBP1P53384 320 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ERVK11-1P61568 191 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 EWSR1Q01844 656 aaKnown RBP eCLIP12.64□□□□□ -0.39
NUP54-217ENST00000514987 GUSBP1Q15486 140 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 NMSQ5H8A3 153 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 PUSL1Q8N0Z8 303 aaKnown RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 CLRN3Q8NCR9 226 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 WNT2BQ93097 391 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 SARAFQ96BY9 339 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 AKR1E2Q96JD6 320 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ZNF488Q96MN9 340 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 ADAT1Q9BUB4 502 aaKnown RBP12.64□□□□□ -0.39
NUP54-217ENST00000514987 OR51B6Q9H340 312 aa12.64□□□□□ -0.39
NUP54-217ENST00000514987 PITX3O75364 302 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 TSPAN15O95858 294 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 PGA5P0DJD9 388 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 MUC1P15941 1255 aaPredicted RBP12.63□□□□□ -0.39
NUP54-217ENST00000514987 ADCYAP1P18509 176 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 F2RP25116 425 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 HOXC12P31275 282 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 IDH3GP51553 393 aaPredicted RBP12.63□□□□□ -0.39
NUP54-217ENST00000514987 AKR1C2P52895 323 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 UCP2P55851 309 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 AKR1C1Q04828 323 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 BAXQ07812 192 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 ZNF146Q15072 292 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 SPATA46Q5T0L3 261 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 ZNF497Q6ZNH5 498 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 C1orf174Q8IYL3 243 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 SCCPDHQ8NBX0 429 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 TRIB1Q96RU8 372 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 OR2J1Q9GZK6 312 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 ASCL3Q9NQ33 180 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 ZDHHC8Q9ULC8 765 aa12.63□□□□□ -0.39
NUP54-217ENST00000514987 SHANK1Q9Y566 2161 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 TOR1AO14656 332 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 NKX2-8O15522 239 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 ADAM20O43506 726 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 RHBDL1O75783 438 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 ID3Q02535 119 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 PEA15Q15121 130 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 OR8G1Q15617 311 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 FAM122CQ6P4D5 195 aa12.62□□□□□ -0.39
NUP54-217ENST00000514987 DEFB124Q8NES8 71 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms