RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 OR4K15Q8NH41 348 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 SETD6Q8TBK2 473 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 CCDC107Q8WV48 283 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 PCGF1Q9BSM1 259 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 C6orf62Q9GZU0 229 aaPredicted RBP12.34□□□□□ -0.43
NUP54-213ENST00000513352 ZMAT3Q9HA38 289 aaKnown RBP12.34□□□□□ -0.43
NUP54-213ENST00000513352 DIABLOQ9NR28 239 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 OR6C3Q9NZP0 311 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 TRAPPC2LQ9UL33 140 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 AUP1Q9Y679 476 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 LINC00312Q9Y6C7 94 aa12.34□□□□□ -0.43
NUP54-213ENST00000513352 J3QLI3 93 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 RAB27BO00194 218 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 EIF4EP06730 217 aaKnown RBP12.33□□□□□ -0.44
NUP54-213ENST00000513352 HIST1H1DP16402 221 aaKnown RBP12.33□□□□□ -0.44
NUP54-213ENST00000513352 TMEM50BP56557 158 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 DYNC1I2Q13409 638 aaKnown RBP12.33□□□□□ -0.44
NUP54-213ENST00000513352 CR1LQ2VPA4 569 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 PLAC9Q5JTB6 97 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 FOXB2Q5VYV0 432 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 ZNF497Q6ZNH5 498 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 IZUMO1Q8IYV9 350 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 MRGPRDQ8TDS7 321 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 S100A16Q96FQ6 103 aaKnown RBP12.33□□□□□ -0.44
NUP54-213ENST00000513352 ZNF714Q96N38 554 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 CMSS1Q9BQ75 279 aaKnown RBP12.33□□□□□ -0.44
NUP54-213ENST00000513352 AK3Q9UIJ7 227 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 HSF4Q9ULV5 492 aa12.33□□□□□ -0.44
NUP54-213ENST00000513352 TRAV18A0A075B6X5 111 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 FOXI3A8MTJ6 420 aaPredicted RBP12.32□□□□□ -0.44
NUP54-213ENST00000513352 TOX4O94842 621 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 CD3GP09693 182 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 CDK2P24941 298 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 MADCAM1Q13477 382 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 ARFRP1Q13795 201 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 CDNFQ49AH0 187 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 OLFML2AQ68BL7 652 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 IL17RELQ6ZVW7 336 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 TCF23Q7RTU1 214 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 KIR3DL3Q8N743 410 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 OR13A1Q8NGR1 328 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 MCFD2Q8NI22 146 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 DACT3Q96B18 629 aaPredicted RBP12.32□□□□□ -0.44
NUP54-213ENST00000513352 WDFY2Q96P53 400 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 HDHD3Q9BSH5 251 aaPredicted RBP12.32□□□□□ -0.44
NUP54-213ENST00000513352 TMPRSS13Q9BYE2 586 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 ABCG5Q9H222 651 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 GAL3ST2Q9H3Q3 398 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 ADAM30Q9UKF2 790 aa12.32□□□□□ -0.44
NUP54-213ENST00000513352 UBE2J1Q9Y385 318 aaPredicted RBP12.32□□□□□ -0.44
NUP54-213ENST00000513352 hCG_1809904A0A1W2PP81 198 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 A0A1W2PPE2 198 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 A0A1W2PR64 198 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 A0A1W2PRV1 198 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 CA11O75493 328 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 APOA1P02647 267 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 MT-ND4P03905 459 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 ZNF728P0DKX0 622 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 HNF1AP20823 631 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 PAX8Q06710 450 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 ARL6IP1Q15041 203 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 TMEM69Q5SWH9 247 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 VMO1Q7Z5L0 202 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 ZNF565Q8N9K5 539 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 SLIRPQ9GZT3 109 aaKnown RBP12.31□□□□□ -0.44
NUP54-213ENST00000513352 BATF3Q9NR55 127 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 SIRT7Q9NRC8 400 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 KPTNQ9Y664 436 aa12.31□□□□□ -0.44
NUP54-213ENST00000513352 A0A0A6YYH2 397 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 TMEM235A6NFC5 223 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 A6NJ64 397 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 SERPINE3A8MV23 424 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 M0R1W7 72 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 MFNGO00587 321 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 CTDSP2O14595 271 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 ELK1P19419 428 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 SRP14P37108 136 aaKnown RBP12.3□□□□□ -0.44
NUP54-213ENST00000513352 TALDO1P37837 337 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 MNDAP41218 407 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 DLX1P56177 255 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 GNG2P59768 71 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 PAX5Q02548 391 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 PRB3Q04118 309 aaPredicted RBP12.3□□□□□ -0.44
NUP54-213ENST00000513352 LTC4SQ16873 150 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 C6orf183Q5T699 404 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 PRAMEF5Q5TYX0 476 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 ZNF782Q6ZMW2 699 aaPredicted RBP12.3□□□□□ -0.44
NUP54-213ENST00000513352 PRR18Q8N4B5 295 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 UBALD1Q8TB05 177 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 MRPL30Q8TCC3 161 aaKnown RBP12.3□□□□□ -0.44
NUP54-213ENST00000513352 SIRPDQ9H106 197 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 C12orf4Q9NQ89 552 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 TAS2R3Q9NYW6 316 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 CALYQ9NYX4 217 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 KCNIP1Q9NZI2 227 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 MRPS7Q9Y2R9 242 aaKnown RBP12.3□□□□□ -0.44
NUP54-213ENST00000513352 KCNK7Q9Y2U2 307 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 HIVEP2P31629 2446 aa12.3□□□□□ -0.44
NUP54-213ENST00000513352 SONP18583 2426 aaKnown RBP12.29□□□□□ -0.44
NUP54-213ENST00000513352 IGHV3OR16-10A0A075B7F0 116 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms