RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 LILRB3O75022 631 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF737O75373 536 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 AKR1A1P14550 325 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 IL3RAP26951 378 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 IL24Q13007 206 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 MRPL49Q13405 166 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 EXT1Q16394 746 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 C1orf100Q5SVJ3 147 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 C9orf50Q5SZB4 431 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF467Q7Z7K2 595 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 LFNGQ8NES3 379 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TSTD1Q8NFU3 115 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 C16orf52Q8NHV5 167 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 RBMXL1Q96E39 390 aaKnown RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 NKX2-4Q9H2Z4 354 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF107Q9UII5 783 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 FBXL7Q9UJT9 491 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ASXL3Q9C0F0 2248 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 MEGF11A6BM72 1044 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 OTOL1A6NHN0 477 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 FIGNL2A6NMB9 653 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 H0YGG7 62 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ITGB1BP1O14713 200 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TNFSF13O75888 250 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 EOMESO95936 686 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 AGR2O95994 175 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 BCL2P10415 239 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 FAHP16930 419 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 CTGFP29279 349 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TLE3Q04726 772 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 DLX2Q07687 328 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM187Q14656 261 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 LHFPL1Q86WI0 220 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ODF3L1Q8IXM7 274 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM170AQ8WVE7 144 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 FAM3CQ92520 227 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TSACCQ96A04 125 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF514Q96K75 400 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 MEGF9Q9H1U4 602 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 ZDHHC11Q9H8X9 412 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 CUTCQ9NTM9 273 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 TBC1D29Q9UFV1 150 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 UBE2J1Q9Y385 318 aaPredicted RBP6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 AHCTF1Q8WYP5 2266 aa6.29□□□□□ -1.4
LIMCH1-207ENST00000508466 IGKV1-9A0A0C4DH69 117 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 OR2T8A6NH00 312 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM14DPA8MWL7 114 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 KIAA1324LA8MWY0 1029 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 DIRC3C9JPN6 131 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 H0Y8G0 127 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 ASAH2BP0C7U1 165 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CT45A8P0DMV1 189 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CT45A9P0DMV2 189 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CMPK1P30085 196 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 HOXC8P31273 242 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 VIPR2P41587 438 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF133P52736 654 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CT45A2Q5DJT8 189 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 AMMECR1LQ6DCA0 310 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 OR8G2PQ6IF36 304 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF114Q8NC26 417 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 LHX4Q969G2 390 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 STARD4Q96DR4 205 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 OR51I2Q9H344 312 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF430Q9H8G1 570 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 Q9N2K0 584 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 NRN1Q9NPD7 142 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 TUBD1Q9UJT1 453 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 TP53TG3Q9ULZ0 132 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 TRAV39A0A0B4J263 110 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 MAP1LC3B2A6NCE7 125 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CRYM-AS1A6NIL9 109 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 ETV2O00321 342 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 HYPMO75409 117 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 DUSP1P28562 367 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 NTSR1P30989 418 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 RND2P52198 227 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 KLF3P57682 345 aaPredicted RBP6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 TMEM183BQ1AE95 376 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 SPINK9Q5DT21 86 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 OR4A47Q6IF82 309 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 ZNF841Q6ZN19 808 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 OR5AS1Q8N127 324 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 RAB42Q8N4Z0 105 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 PINX1Q96BK5 328 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 SARAFQ96BY9 339 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 LRRC3BQ96PB8 259 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 MAP1LC3BQ9GZQ8 125 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 TWSG1Q9GZX9 223 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CSTL1Q9H114 145 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 VDAC3Q9Y277 283 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 WDR90Q96KV7 1748 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 CHD9Q3L8U1 2897 aa6.28□□□□□ -1.4
LIMCH1-207ENST00000508466 THSD7AQ9UPZ6 1657 aa6.27□□□□□ -1.4
LIMCH1-207ENST00000508466 ABCA1O95477 2261 aa6.27□□□□□ -1.41
LIMCH1-207ENST00000508466 NUDT21O43809 227 aaKnown RBP6.27□□□□□ -1.41
LIMCH1-207ENST00000508466 ZNF16P17020 682 aaPredicted RBP6.27□□□□□ -1.41
LIMCH1-207ENST00000508466 TCL1AP56279 114 aa6.27□□□□□ -1.41
LIMCH1-207ENST00000508466 SUMO1P63165 101 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms