RNA–Protein interactions for RNA: ENST00000466624.1

GPC1-207, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 782 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-207ENST00000466624 SIRPDQ9H106 197 aa13.17□□□□□ -0.3
GPC1-207ENST00000466624 GSX1Q9H4S2 264 aaPredicted RBP13.17□□□□□ -0.3
GPC1-207ENST00000466624 C7orf69Q9H7B7 122 aa13.17□□□□□ -0.3
GPC1-207ENST00000466624 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.17□□□□□ -0.3
GPC1-207ENST00000466624 TAS2R3Q9NYW6 316 aa13.17□□□□□ -0.3
GPC1-207ENST00000466624 KIF25Q9UIL4 384 aa13.17□□□□□ -0.3
GPC1-207ENST00000466624 AUP1Q9Y679 476 aa13.17□□□□□ -0.3
GPC1-207ENST00000466624 MEIKINA0A087WXM9 373 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 UBE2QL1A1L167 161 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 SERPINE3A8MV23 424 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 MFNGO00587 321 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 MT-ND4P03905 459 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 MMP9P14780 707 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 HIST1H1DP16402 221 aaKnown RBP13.16□□□□□ -0.3
GPC1-207ENST00000466624 DLX6P56179 175 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 CR1LQ2VPA4 569 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 METTL11BQ5VVY1 283 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 SAMD12Q8N8I0 201 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 PHF21AQ96BD5 680 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 ZNF714Q96N38 554 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 WDFY2Q96P53 400 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 FAAP24Q9BTP7 215 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 GAL3ST2Q9H3Q3 398 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 RIMS4Q9H426 269 aaPredicted RBP13.16□□□□□ -0.3
GPC1-207ENST00000466624 UNKLQ9H9P5 680 aaKnown RBP13.16□□□□□ -0.3
GPC1-207ENST00000466624 ONECUT1Q9UBC0 465 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 COMMD3Q9UBI1 195 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 OPN4Q9UHM6 478 aa13.16□□□□□ -0.3
GPC1-207ENST00000466624 HIVEP2P31629 2446 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 ANK3Q12955 4377 aaKnown RBP13.15□□□□□ -0.3
GPC1-207ENST00000466624 A0A075B6Q4 140 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 hCG_1809904A0A1W2PP81 198 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 A0A1W2PPE2 198 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 A0A1W2PR64 198 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 A0A1W2PRV1 198 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 ZNF729A6NN14 1252 aaPredicted RBP13.15□□□□□ -0.3
GPC1-207ENST00000466624 C17orf98A8MV24 154 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 NAPSAO96009 420 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 APOA1P02647 267 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 ZNF728P0DKX0 622 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 CGB3P0DN86 165 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 CGB7P0DN87 165 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 ARF6P62330 175 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 ZNF565Q8N9K5 539 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 UPRTQ96BW1 309 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 S100A16Q96FQ6 103 aaKnown RBP13.15□□□□□ -0.3
GPC1-207ENST00000466624 SLIRPQ9GZT3 109 aaKnown RBP13.15□□□□□ -0.3
GPC1-207ENST00000466624 METTL8Q9H825 291 aaKnown RBP13.15□□□□□ -0.3
GPC1-207ENST00000466624 DIABLOQ9NR28 239 aa13.15□□□□□ -0.3
GPC1-207ENST00000466624 TRBV6-6A0A0A6YYG2 114 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 TOX4O94842 621 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 GSTP1P09211 210 aaKnown RBP13.14□□□□□ -0.31
GPC1-207ENST00000466624 CCL3L1P16619 93 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 GZMHP20718 246 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 TRAT1Q6PIZ9 186 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 TRAPPC6BQ86SZ2 158 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 ZNF554Q86TJ5 538 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 C11orf42Q8N5U0 333 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 Q8N7P7 452 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 OR13A1Q8NGR1 328 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 MRPL30Q8TCC3 161 aaKnown RBP13.14□□□□□ -0.31
GPC1-207ENST00000466624 DYRK2Q92630 601 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 NXF2Q9GZY0 626 aaKnown RBP13.14□□□□□ -0.31
GPC1-207ENST00000466624 LINC00574Q9H8X3 128 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 BATF3Q9NR55 127 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 MBNL3Q9NUK0 354 aaKnown RBP13.14□□□□□ -0.31
GPC1-207ENST00000466624 ING3Q9NXR8 418 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 AK3Q9UIJ7 227 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 KCNK7Q9Y2U2 307 aa13.14□□□□□ -0.31
GPC1-207ENST00000466624 A6NHS1 94 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 XRCC3O43542 346 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 ORC5O43913 435 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 AVPP01185 164 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 GNB3P16520 340 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 HNF1AP20823 631 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 PRTN3P24158 256 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 GLP1RP43220 463 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 PNLIPRP3Q17RR3 467 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 ZNF260Q3ZCT1 412 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 FAM120AOSQ5T036 256 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 C6orf183Q5T699 404 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 FOXB2Q5VYV0 432 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 ZNF880Q6PDB4 577 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 C1orf229Q6ZS94 237 aaPredicted RBP13.13□□□□□ -0.31
GPC1-207ENST00000466624 MOB1BQ7L9L4 216 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 RTN4RL2Q86UN3 420 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 TBX15Q96SF7 602 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 CMSS1Q9BQ75 279 aaKnown RBP13.13□□□□□ -0.31
GPC1-207ENST00000466624 C12orf4Q9NQ89 552 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 A3GALT2U3KPV4 340 aa13.13□□□□□ -0.31
GPC1-207ENST00000466624 NSD1Q96L73 2696 aaPredicted RBP13.13□□□□□ -0.31
GPC1-207ENST00000466624 KBTBD11-OT1A0A1B0GTJ5 212 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 HPGDSO60760 199 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 CLPXO76031 633 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 FSHBP01225 129 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 EIF4EP06730 217 aaKnown RBP13.12□□□□□ -0.31
GPC1-207ENST00000466624 CDK2P24941 298 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 ERVFRD-1P60508 538 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 CDNFQ49AH0 187 aa13.12□□□□□ -0.31
GPC1-207ENST00000466624 HEPN1Q6WQI6 88 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 808.4 ms