RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KCNK15Q9H427 330 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 SCN7AQ01118 1682 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 ZNF345Q14585 488 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 TMEM65Q6PI78 240 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 CXorf67Q86X51 503 aaPredicted RBP9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 TDHQ8IZJ6 230 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 OR10D3Q8NH80 312 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 PEF1Q9UBV8 284 aaKnown RBP9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 PRSS50Q9UI38 385 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 SCN9AQ15858 1988 aa9.05□□□□□ -0.96
LIMCH1-203ENST00000396595 C2CD4DB7Z1M9 353 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 MFNGO00587 321 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 RBP4P02753 201 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ANKRD34CP0C6C1 535 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 MYF5P13349 255 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 RPS4Y1P22090 263 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 CTGFP29279 349 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 FGF8P55075 233 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 DEFB109BQ30KR1 87 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 TMEM91Q6ZNR0 172 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 Q6ZS52 159 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 TBC1D26Q86UD7 250 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 RNF133Q8WVZ7 376 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 GAL3ST2Q9H3Q3 398 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 TMEM265A0A087WTH1 108 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 M0R3E3 92 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 SOCS1O15524 211 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 CSN3P07498 182 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 DRD3P35462 400 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 OR10G8Q8NGN5 311 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 TRMT61AQ96FX7 289 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 PARP11Q9NR21 331 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 VAX2Q9UIW0 290 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 NEU3Q9UQ49 428 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 BCORQ6W2J9 1755 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 SPAG17Q6Q759 2223 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 TRDCB7Z8K6 153 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 GNG7O60262 68 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 GALNSP34059 522 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 CAMPP49913 170 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 PSG6Q00889 435 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ACER2Q5QJU3 275 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ERASQ7Z444 233 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 VASH2Q86V25 355 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 NIT1Q86X76 327 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ALX4Q9H161 411 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 IGF2P01344 180 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ORM1P02763 201 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 SOD3P08294 240 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 GZMMP51124 257 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ZNF273Q14593 569 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 FAM74A3Q4VXF1 159 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 FNDC7Q5VTL7 733 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 OR8A1Q8NGG7 326 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 VCX2Q9H322 139 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 IL36GQ9NZH8 169 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 LINC01565O15544 149 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 LANCL1O43813 399 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 RAC3P60763 192 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 OR4S2Q8NH73 311 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 SEBOXQ9HB31 216 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 ELF5Q9UKW6 265 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 KIF13AQ9H1H9 1805 aa9.04□□□□□ -0.96
LIMCH1-203ENST00000396595 SMCHD1A6NHR9 2005 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 RECKO95980 971 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 BTF3P20290 206 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 PMCHL1Q16048 86 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 ALKBH6Q3KRA9 238 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 CALHM1Q8IU99 346 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 OR10AC1Q8NH08 325 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 MISP3Q96FF7 219 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 HSF4Q9ULV5 492 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SHISA7A6NL88 538 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 DEFB108AA8MXU0 73 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 MELTFP08582 738 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SEC11BP0C7V7 166 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 ZXDAP98168 799 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 EIF3IQ13347 325 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 CD226Q15762 336 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 C10orf111Q8N326 155 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SF3B5Q9BWJ5 86 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 MFRPQ9BY79 579 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SRD5A3Q9H8P0 318 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SLC7A10Q9NS82 523 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 TECRQ9NZ01 308 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SCN1AP35498 2009 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 hADV38S2A0JD32 116 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 LIPT2A6NK58 231 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 CHST1O43916 411 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 SP1P08047 785 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 LRRC29Q8WV35 223 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 ASB5Q8WWX0 329 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 PPP1R3EQ9H7J1 279 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 CLDN16Q9Y5I7 305 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 MRPL24Q96A35 216 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 DNAJC4Q9NNZ3 241 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 FAM60AQ9NP50 221 aa9.03□□□□□ -0.96
LIMCH1-203ENST00000396595 TRAV8-7A0A075B6U6 113 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 PPYP01298 95 aa9.02□□□□□ -0.96
LIMCH1-203ENST00000396595 APCSP02743 223 aa9.02□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms