RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 LYRM1O43325 122 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 MRPS14O60783 128 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 ERVK11-1P61568 191 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 FXYD3Q14802 87 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 DTX2Q86UW9 622 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 OR1L8Q8NGR8 309 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 TERB2Q8NHR7 220 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 PLAC1Q9HBJ0 212 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 FLRT3Q9NZU0 649 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 MYOD1P15172 320 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 PSG6Q00889 435 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 SRSF4Q08170 494 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 IAH1Q2TAA2 248 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF672Q499Z4 452 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 BRD3OSQ6XYD6 125 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 LIMS2Q7Z4I7 341 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 PIP4P1Q86T03 277 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 RHOFQ9HBH0 211 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 ST6GALNAC2Q9UJ37 374 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 ARID1BQ8NFD5 2236 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 RREB1Q92766 1687 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 CD160O95971 181 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 IGKV1D-33P01593 117 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 IGKV1-33P01594 117 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 BPESC1Q9GZL8 116 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 HSD3B7Q9H2F3 369 aa7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 PPIL3Q9H2H8 161 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-202ENST00000381753 RIF1Q5UIP0 2472 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 ADAMTSL1Q8N6G6 1762 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 CLEC18AA5D8T8 446 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 ZP3P21754 424 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 MPV17P39210 176 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 HIST2H3PS2Q5TEC6 136 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 GGNBP1Q5YKI7 109 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 RTN4RL2Q86UN3 420 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 CLEC18CQ8NCF0 446 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 RGP1Q92546 391 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 NIPSNAP1Q9BPW8 284 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PLEKHA2Q9HB19 425 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 MOB4Q9Y3A3 225 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 CABIN1Q9Y6J0 2220 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PATJQ8NI35 1801 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 CRPP02741 224 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 CGB7P0DN87 165 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PSG4Q00888 419 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 TMEM41BQ5BJD5 291 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 C16orf82Q7Z2V1 217 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 ISOC1Q96CN7 298 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 IGHV2OR16-5A0A0B4J2B6 119 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 OR4C46A6NHA9 309 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 DUS4LO95620 317 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 MUC1P15941 1255 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF708P17019 499 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF415Q09FC8 603 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 LDLRAD2Q5SZI1 272 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 CNIH2Q6PI25 160 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PPP1R27Q86WC6 154 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 FAM219AQ8IW50 185 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 TMED6Q8WW62 240 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 MEGF10Q96KG7 1140 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 OR2M2Q96R28 347 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 FUNDC2Q9BWH2 189 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PRNDQ9UKY0 176 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 TMEM56-RWDD3S4R434 201 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 A0A1W2PPV9 198 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 HELTA6NFD8 242 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 NPIPB11E5RHQ5 1161 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 SSSCA1O60232 199 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PEX11BO96011 259 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 PSMB3P49720 205 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 ASCL4Q6XD76 172 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 LCNL1Q6ZST4 164 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 OR8B12Q8NGG6 310 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 OR2T35Q8NGX2 323 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 OR4Q3Q8NH05 313 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 LINC01587Q99440 93 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 TAF9BQ9HBM6 251 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 RASL12Q9NYN1 266 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 COL6A6A6NMZ7 2263 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 SULT1A3P0DMM9 295 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 SULT1A4P0DMN0 295 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 GPX2P18283 190 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 NPPCP23582 126 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 HTR2BP41595 481 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 OR2W3Q7Z3T1 314 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 MAP6Q96JE9 813 aa7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 THAP7Q9BT49 309 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-202ENST00000381753 LAMB1P07942 1786 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 COL24A1Q17RW2 1714 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 CNOT1A5YKK6 2376 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 A0A0G2JMM0 328 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 A0A1W2PPB8 328 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 A0A1W2PRS3 328 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 TCRBV5S1A1TA0A578 114 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 TMEM82A0PJX8 343 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 KIR3DP1A8MWS1 328 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 CPN1P15169 458 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 CNN1P51911 297 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 ZNF266Q14584 549 aa7.93□□□□□ -1.14
LIMCH1-202ENST00000381753 OR5B3Q8NH48 314 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms