RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 HLA-DRB3P79483 266 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 DHODHQ02127 395 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 TFF3Q07654 80 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 ATXN7L3Q14CW9 347 aaPredicted RBP15.26■□□□□ 0.03
VIM-201ENST00000224237 IGSF11Q5DX21 431 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 UXS1Q8NBZ7 420 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 GRPEL2Q8TAA5 225 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 GCM1Q9NP62 436 aa15.26■□□□□ 0.03
VIM-201ENST00000224237 E7EQL1 145 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 LHBP01229 141 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 TK1P04183 234 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 CD55P08174 381 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 SCTP09683 121 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 VAMP1P23763 118 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 Q8TCH9 128 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 TMEM230Q96A57 120 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 TMPRSS13Q9BYE2 586 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 SEBOXQ9HB31 216 aaPredicted RBP15.25■□□□□ 0.03
VIM-201ENST00000224237 DNAJB11Q9UBS4 358 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 RNF115Q9Y4L5 304 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 SPTBN1Q01082 2364 aaKnown RBP15.25■□□□□ 0.03
VIM-201ENST00000224237 SMLR1H3BR10 107 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.25■□□□□ 0.03
VIM-201ENST00000224237 CTSDP07339 412 aaPredicted RBP15.25■□□□□ 0.03
VIM-201ENST00000224237 TNFRSF1AP19438 455 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 CD34P28906 385 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 TESK1Q15569 626 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 LAMTOR1Q6IAA8 161 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 ZNF808Q8N4W9 903 aaPredicted RBP15.25■□□□□ 0.03
VIM-201ENST00000224237 OR4A4PQ8NGN8 299 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 MITD1Q8WV92 249 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 MOB3AQ96BX8 217 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 PHB2Q99623 299 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 FXYD6Q9H0Q3 95 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 DLL4Q9NR61 685 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 RNF7Q9UBF6 113 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 WIPI2Q9Y4P8 454 aa15.25■□□□□ 0.03
VIM-201ENST00000224237 ZG16O60844 167 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 DUS4LO95620 317 aaKnown RBP15.24■□□□□ 0.03
VIM-201ENST00000224237 GIPP09681 153 aaPredicted RBP15.24■□□□□ 0.03
VIM-201ENST00000224237 PSG2P11465 335 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 RCC1P18754 421 aaPredicted RBP15.24■□□□□ 0.03
VIM-201ENST00000224237 PI3P19957 117 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 APOBEC3AP31941 199 aaPredicted RBP15.24■□□□□ 0.03
VIM-201ENST00000224237 HERV-K104P61576 105 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 COL10A1Q03692 680 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 FAM209AQ5JX71 171 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 C11orf88Q6PI97 169 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 SLC7A5P1Q8MH63 180 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 OR5T2Q8NGG2 359 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 NEUROG1Q92886 237 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 BBC3Q96PG8 261 aaPredicted RBP15.24■□□□□ 0.03
VIM-201ENST00000224237 SLC23A1Q9UHI7 598 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 TRAPPC2LQ9UL33 140 aa15.24■□□□□ 0.03
VIM-201ENST00000224237 PKDREJQ9NTG1 2253 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 TMEM30CPA0ZSE6 113 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 GOSR2O14653 212 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 BET1O15155 118 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 SLC22A5O76082 557 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 PPYP01298 95 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 PRB1P04280 392 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 ZNF728P0DKX0 622 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 S100A1P23297 94 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 NFYAP23511 347 aaPredicted RBP15.23■□□□□ 0.03
VIM-201ENST00000224237 UCP3P55916 312 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 HERPUD1Q15011 391 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 BOLLQ8N9W6 283 aaKnown RBP15.23■□□□□ 0.03
VIM-201ENST00000224237 OR11L1Q8NGX0 322 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 TOMM40LQ969M1 308 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 CLEC4MQ9H2X3 399 aaPredicted RBP15.23■□□□□ 0.03
VIM-201ENST00000224237 MBNL3Q9NUK0 354 aaKnown RBP15.23■□□□□ 0.03
VIM-201ENST00000224237 PCDHB10Q9UN67 800 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 HSPB11Q9Y547 144 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 SIAH2O43255 324 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 OR2A4O95047 310 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 ZNF205O95201 554 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 DIRAS3O95661 229 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 AGAP20933 346 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 PRDX2P32119 198 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 FXYD4P59646 89 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 SEC61A1P61619 476 aaKnown RBP15.23■□□□□ 0.03
VIM-201ENST00000224237 EFNB3Q15768 340 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 SLC35E4Q6ICL7 350 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 NLRC3Q7RTR2 1065 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 ASB13Q8WXK3 278 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 OR2A7Q96R45 310 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 CABLES2Q9BTV7 478 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 PPP1R3CQ9UQK1 317 aa15.23■□□□□ 0.03
VIM-201ENST00000224237 SFT2D2O95562 160 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 IRF2P14316 349 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 AADACP22760 399 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 OR3A1P47881 315 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 CCL8P80075 99 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 C2orf68Q2NKX9 166 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 LPCAT3Q6P1A2 487 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 SLC38A6Q8IZM9 456 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 C9orf62Q8N4C0 152 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 CD177Q8N6Q3 437 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 CASTOR1Q8WTX7 329 aa15.22■□□□□ 0.03
VIM-201ENST00000224237 CHIAQ9BZP6 476 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms