RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 UBE2V2Q15819 145 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PDLIM3Q53GG5 364 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 WDR25Q64LD2 544 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 MRPL21Q7Z2W9 205 aaKnown RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 GKN2Q86XP6 184 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TGIF2LXQ8IUE1 241 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 FBXL14Q8N1E6 418 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ZCCHC14Q8WYQ9 949 aaKnown RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 SLC46A1Q96NT5 459 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF426Q9BUY5 554 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 UCK1Q9HA47 277 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PARD6AQ9NPB6 346 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TMEM100Q9NV29 134 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 RNF150Q9ULK6 438 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 RIF1Q5UIP0 2472 aaKnown RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 FREM3P0C091 2139 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CACNA1BQ00975 2339 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TRAV14DV4A0A0A6YYC5 116 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 RBFOX3A6NFN3 312 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 MFNGO00587 321 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TP53I11O14683 189 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CFIP05156 583 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 KLK3P07288 261 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PGA4P0DJD7 388 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 PGA5P0DJD9 388 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ACKR3P25106 362 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CCR5P51681 352 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TAS2R30P59541 319 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 KISS1Q15726 138 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 VAMP3Q15836 100 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 GRINAQ7Z429 371 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 BIVMQ86UB2 503 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 VASH2Q86V25 355 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 SLC35G3Q8N808 338 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 CYB561D1Q8N8Q1 229 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 ADAT3Q96EY9 351 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-203ENST00000547825 AKAP13Q12802 2813 aa4.79□□□□□ -1.64
LIMA1-203ENST00000547825 TGIF2-C20orf24A0A0A6YYL0 155 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF785A8K8V0 405 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 PRR32B1ATL7 298 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 METTL15P1P0C7V9 234 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ACAA2P42765 397 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 PCP4P48539 62 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 RBP2P50120 134 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ADPRHP54922 357 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 OR5I1Q13606 314 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 FHL1Q13642 323 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SLC25A26Q70HW3 274 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SLC36A1Q7Z2H8 476 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 MRGPREQ86SM8 312 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF808Q8N4W9 903 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 LIPHQ8WWY8 451 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 BSCL2Q96G97 398 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 MS4A10Q96PG2 267 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF275Q9NSD4 429 aaPredicted RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 CES1P1Q9UKY3 287 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 TRAPPC2LQ9UL33 140 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 RPH3ALQ9UNE2 315 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ST3GAL6Q9Y274 331 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 PAM16Q9Y3D7 125 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 STRAPQ9Y3F4 350 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 CADP27708 2225 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 GPR179Q6PRD1 2367 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 KIR2DS5A0A0G2JLQ3 304 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 A0A0G2JNG1 304 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 A0A1W2PPE3 182 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 RNF222A6NCQ9 220 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 KIR2DS3K7RE56 304 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 MASP2O00187 686 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 GATCO43716 136 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 IGKV1D-16P01601 117 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 RAC2P15153 192 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZBTB25P24278 435 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 DDTP30046 118 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ZNF117Q03924 483 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 KIR2DS5Q14953 304 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 OR8G1Q15617 311 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 TBR1Q16650 682 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SLC16A14Q7RTX9 510 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 TEX101Q9BY14 249 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 GPR87Q9BY21 358 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 SH3BGRL3Q9H299 93 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ENY2Q9NPA8 101 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 DLL3Q9NYJ7 618 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 TP53TG5Q9Y2B4 290 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 MDFIC2A0A1B0GVS7 189 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 TRAPPC2LH3BP13 241 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 M0R135 149 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 ADAM20O43506 726 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 EIF1BO60739 113 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 UPK3AO75631 287 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 CST2P09228 141 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 GABRG2P18507 467 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 RAB4AP20338 218 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 PAX6P26367 422 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 EIF1P41567 113 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 NOVA1P51513 510 aaKnown RBP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 PTTG1IPP53801 180 aa4.78□□□□□ -1.64
LIMA1-203ENST00000547825 RPS11P62280 158 aaKnown RBP eCLIP4.78□□□□□ -1.64
LIMA1-203ENST00000547825 HBG1P69891 147 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 600.5 ms